miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00103;mir-1;ABJB010316955.1/9942-10021 6945:Ixodes scapularis
          (black-legged tick)
          Length = 80

 Score =  159 bits (80), Expect = 8e-39
 Identities = 80/80 (100%)
 Strand = Plus / Plus

                                                                      
Query: 5  ttcggatcaccgtgcttccttacttcccatatgtgtcccctcagagcggtatggaatgta 64
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ttcggatcaccgtgcttccttacttcccatatgtgtcccctcagagcggtatggaatgta 60

                              
Query: 65 aagaagtatggagttccggt 84
          ||||||||||||||||||||
Sbjct: 61 aagaagtatggagttccggt 80




>RF00103;mir-1;ABLF01045264.1/8417-8511 7029:Acyrthosiphon pisum
          (pea aphid)
          Length = 95

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 53 gtatggaatgtaaagaagtatggag 77
          |||||||||||||||||||||||||
Sbjct: 67 gtatggaatgtaaagaagtatggag 91




>RF00103;mir-1;AAZX01000650.1/30055-30128 7425:Nasonia vitripennis
          (jewel wasp)
          Length = 74

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 53 gtatggaatgtaaagaagtatggag 77
          |||||||||||||||||||||||||
Sbjct: 43 gtatggaatgtaaagaagtatggag 67



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 14 ccgtgcttccttacttcccata 35
          ||||||||||||||||||||||
Sbjct: 10 ccgtgcttccttacttcccata 31




>RF00103;mir-1;AADG05005577.1/859-932 7460:Apis mellifera (honey
          bee)
          Length = 74

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 53 gtatggaatgtaaagaagtatggag 77
          |||||||||||||||||||||||||
Sbjct: 43 gtatggaatgtaaagaagtatggag 67



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 14 ccgtgcttccttacttcccata 35
          ||||||||||||||||||||||
Sbjct: 10 ccgtgcttccttacttcccata 31




>RF00103;mir-1;AAJJ01000046.1/50771-50844 7070:Tribolium castaneum
          (red flour beetle)
          Length = 74

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 53 gtatggaatgtaaagaagtatggag 77
          |||||||||||||||||||||||||
Sbjct: 43 gtatggaatgtaaagaagtatggag 67



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 14 ccgtgcttccttacttcccata 35
          ||||||||||||||||||||||
Sbjct: 10 ccgtgcttccttacttcccata 31




>RF00103;mir-1;AAZO01007144.1/49277-49350 121224:Pediculus humanus
          corporis (human body louse)
          Length = 74

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 54 tatggaatgtaaagaagtatggag 77
          ||||||||||||||||||||||||
Sbjct: 44 tatggaatgtaaagaagtatggag 67



 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 14 ccgtgcttccttacttcccatat 36
          |||||||||||||||||||||||
Sbjct: 10 ccgtgcttccttacttcccatat 32




>RF00103;mir-1;BAAB01105211.1/2094-2168 7091:Bombyx mori (domestic
          silkworm)
          Length = 75

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 54 tatggaatgtaaagaagtatggag 77
          ||||||||||||||||||||||||
Sbjct: 45 tatggaatgtaaagaagtatggag 68



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 14 ccgtgcttccttacttcccata 35
          ||||||||||||||||||||||
Sbjct: 10 ccgtgcttccttacttcccata 31




>RF00103;mir-1;AAGE02025061.1/66260-66336 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 77

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 54 tatggaatgtaaagaagtatggag 77
          ||||||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatggag 70




>RF00103;mir-1;ABKP02019312.1/70476-70554 377271:Anopheles gambiae
          M
          Length = 79

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 54 tatggaatgtaaagaagtatggag 77
          ||||||||||||||||||||||||
Sbjct: 49 tatggaatgtaaagaagtatggag 72




>RF00103;mir-1;ABKQ02015823.1/27063-26985 377270:Anopheles gambiae
          S
          Length = 79

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 54 tatggaatgtaaagaagtatggag 77
          ||||||||||||||||||||||||
Sbjct: 49 tatggaatgtaaagaagtatggag 72




>RF00103;mir-1;AAPT01020974.1/21428-21504 7222:Drosophila
          grimshawi
          Length = 77

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 54 tatggaatgtaaagaagtatggag 77
          ||||||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatggag 70




>RF00103;mir-1;AAPU01010689.1/17805-17881 7230:Drosophila
          mojavensis
          Length = 77

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 54 tatggaatgtaaagaagtatggag 77
          ||||||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatggag 70




>RF00103;mir-1;CABB01004866.1/4222-4314 6306:Meloidogyne incognita
          (southern root-knot nematode)
          Length = 93

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 54 tatggaatgtaaagaagtatggagtt 79
          ||||||||||||||||||||| ||||
Sbjct: 63 tatggaatgtaaagaagtatgtagtt 88




>RF00103;mir-1;ABEP02026713.1/2484-2559 7739:Branchiostoma
          floridae (Florida lancelet)
          Length = 76

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 53 gtatggaatgtaaagaagtatg 74
          ||||||||||||||||||||||
Sbjct: 45 gtatggaatgtaaagaagtatg 66