miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00047;mir-2;ABJB010692301.1/11645-11574 6945:Ixodes scapularis
(black-legged tick)
Length = 72
Score = 143 bits (72), Expect = 5e-34
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 16 gcagccgtcaaagggactgtgaaatgtctcccttcttggtcagcatatcacagccacctt 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcagccgtcaaagggactgtgaaatgtctcccttcttggtcagcatatcacagccacctt 60
Query: 76 tgatgagctgta 87
||||||||||||
Sbjct: 61 tgatgagctgta 72
>RF00047;mir-2;AAQB01006412.1/121627-121699 7260:Drosophila
willistoni
Length = 73
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 56 cagcatatcacagccacctttgatgagct 84
|||||||||||||||| ||||||||||||
Sbjct: 42 cagcatatcacagccagctttgatgagct 70
>RF00047;mir-2;AAWU01020422.1/10370-10299 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 72
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 58 gcatatcacagccacctttgatgagctg 85
|||||||||||||| |||||||||||||
Sbjct: 43 gcatatcacagccagctttgatgagctg 70
>RF00047;mir-2;AAPU01010520.1/77496-77569 7230:Drosophila
mojavensis
Length = 74
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 57 agcatatcacagccacctttgatgagct 84
||||||||||||||| ||||||||||||
Sbjct: 44 agcatatcacagccagctttgatgagct 71
>RF00047;mir-2;AAGE02012793.1/16205-16139 7159:Aedes aegypti
(yellow fever mosquito)
Length = 67
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 59 catatcacagccacctttgatgagctg 85
||||||||||||| |||||||||||||
Sbjct: 39 catatcacagccagctttgatgagctg 65
>RF00047;mir-2;AAFS01000655.1/43310-43241 46245:Drosophila
pseudoobscura pseudoobscura
Length = 70
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 58 gcatatcacagccacctttgatgagct 84
|||||||||||||| ||||||||||||
Sbjct: 41 gcatatcacagccagctttgatgagct 67
>RF00047;mir-2;AASS01038618.1/536-465 7240:Drosophila simulans
Length = 72
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 58 gcatatcacagccacctttgatgagct 84
|||||||||||||| ||||||||||||
Sbjct: 43 gcatatcacagccagctttgatgagct 69
>RF00047;mir-2;AANI01013749.1/162154-162082 7244:Drosophila
virilis
Length = 73
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 58 gcatatcacagccacctttgatgagct 84
|||||||||||||| ||||||||||||
Sbjct: 44 gcatatcacagccagctttgatgagct 70
>RF00047;mir-2;AANI01013749.1/161880-161816 7244:Drosophila
virilis
Length = 65
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 58 gcatatcacagccacctttgatgagct 84
|||||||||||||| ||||||||||||
Sbjct: 36 gcatatcacagccagctttgatgagct 62
>RF00047;mir-2;AASC02030054.1/10531-10596 6500:Aplysia californica
(California sea hare)
Length = 66
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 catatcacagccacctttgatgagct 84
||||||||||||| ||||||||||||
Sbjct: 38 catatcacagccagctttgatgagct 63
>RF00047;mir-2;AAAB01008807.1/11607145-11607220 180454:Anopheles
gambiae str. PEST
Length = 76
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 catatcacagccacctttgatgagct 84
||||||||||||| ||||||||||||
Sbjct: 48 catatcacagccagctttgatgagct 73
