miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00241;mir-8;ABJB010621523.1/197-271 6945:Ixodes scapularis
(black-legged tick)
Length = 75
Score = 149 bits (75), Expect = 7e-36
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 13 acccgtcaacatcttaccagacagcattagattgagcctgatttctaatactgtcaggta 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acccgtcaacatcttaccagacagcattagattgagcctgatttctaatactgtcaggta 60
Query: 73 aagatgtccgcggga 87
|||||||||||||||
Sbjct: 61 aagatgtccgcggga 75
>RF00241;mir-8;AADG05004155.1/1299-1373 7460:Apis mellifera (honey
bee)
Length = 75
Score = 58.0 bits (29), Expect = 2e-08
Identities = 54/61 (88%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 21 acatcttaccagacagcattagattgagcctgat-ttctaatactgtcaggtaaagatgt 79
|||||||||| | |||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 9 acatcttaccgggcagcattagattgaagttgaccttctaatactgtcaggtaaagatgt 68
Query: 80 c 80
|
Sbjct: 69 c 69
>RF00241;mir-8;AAAB01008986.1/3020387-3020310 180454:Anopheles
gambiae str. PEST
Length = 78
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 53 atttctaatactgtcaggtaaagatgtc 80
||||||||||||||||||||||||||||
Sbjct: 45 atttctaatactgtcaggtaaagatgtc 72
>RF00241;mir-8;BAAB01175925.1/123-47 7091:Bombyx mori (domestic
silkworm)
Length = 77
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 54 tttctaatactgtcaggtaaagatgtc 80
|||||||||||||||||||||||||||
Sbjct: 45 tttctaatactgtcaggtaaagatgtc 71
>RF00241;mir-8;AAJJ01001355.1/29616-29540 7070:Tribolium castaneum
(red flour beetle)
Length = 77
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 55 ttctaatactgtcaggtaaagatgtcc 81
|||||||||||||||||||||||||||
Sbjct: 45 ttctaatactgtcaggtaaagatgtcc 71
>RF00241;mir-8;AAQB01006282.1/186530-186609 7260:Drosophila
willistoni
Length = 80
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 tctaatactgtcaggtaaagatgtc 80
|||||||||||||||||||||||||
Sbjct: 50 tctaatactgtcaggtaaagatgtc 74
>RF00241;mir-8;AAPU01010182.1/5430-5508 7230:Drosophila mojavensis
Length = 79
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 tctaatactgtcaggtaaagatgtc 80
|||||||||||||||||||||||||
Sbjct: 49 tctaatactgtcaggtaaagatgtc 73
>RF00241;mir-8;AAZO01008551.1/16828-16905 121224:Pediculus humanus
corporis (human body louse)
Length = 78
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 55 ttctaatactgtcaggtaaagatgtcc 81
||||||||||||||||||| |||||||
Sbjct: 46 ttctaatactgtcaggtaatgatgtcc 72
>RF00241;mir-8;ABLF01004189.1/21301-21379 7029:Acyrthosiphon pisum
(pea aphid)
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 56 tctaatactgtcaggtaaagatgtcc 81
|||||||||||||||||| |||||||
Sbjct: 48 tctaatactgtcaggtaatgatgtcc 73
