miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00838;mir-252;ABJB010205097.1/5176-5282 6945:Ixodes scapularis
(black-legged tick)
Length = 107
Score = 125 bits (63), Expect = 1e-28
Identities = 93/99 (93%), Gaps = 3/99 (3%)
Strand = Plus / Plus
Query: 4 gtgtgttttaagtcctttaagtagtagtgccgcaggtaagggcttggcactggtacctgc 63
|||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 11 gtgtgtttta-gtcctttaagtagtagtgccgcaggtaagggcttgccactgttacctgc 69
Query: 64 acacaactgc-tgactgatgaaatccactgaaacgcaac 101
|||||||||| |||||||| |||| ||||||||||||||
Sbjct: 70 acacaactgcttgactgattaaat-cactgaaacgcaac 107
>RF00838;mir-252;AAQA01000035.1/130050-130151 6279:Brugia malayi
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 taagtagtagtgccgcaggtaa 42
||||||||||||||||||||||
Sbjct: 25 taagtagtagtgccgcaggtaa 46
>RF00838;mir-252;CAAC02000450.1/1710699-1710587
6238:Caenorhabditis briggsae
Length = 113
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 taagtagtagtgccgcaggtaa 42
||||||||||||||||||||||
Sbjct: 27 taagtagtagtgccgcaggtaa 48
>RF00838;mir-252;ABLE02011229.1/3010-3114 281687:Caenorhabditis
japonica
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 taagtagtagtgccgcaggtaa 42
||||||||||||||||||||||
Sbjct: 27 taagtagtagtgccgcaggtaa 48
>RF00838;mir-252;AAGD02000357.1/21908-22018 31234:Caenorhabditis
remanei
Length = 111
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 taagtagtagtgccgcaggtaa 42
||||||||||||||||||||||
Sbjct: 27 taagtagtagtgccgcaggtaa 48
>RF00838;mir-252;Z66521.1/2054-1944 6239:Caenorhabditis elegans
Length = 111
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 taagtagtagtgccgcaggtaa 42
||||||||||||||||||||||
Sbjct: 27 taagtagtagtgccgcaggtaa 48
>RF00838;mir-252;ABEG01023523.1/4749-4856 135651:Caenorhabditis
brenneri
Length = 108
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 taagtagtagtgccgcaggtaa 42
||||||||||||||||||||||
Sbjct: 27 taagtagtagtgccgcaggtaa 48
>RF00838;mir-252;ABKE01000496.1/4965-5072 54126:Pristionchus
pacificus
Length = 108
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 taagtagtagtgccgcaggtaa 42
||||||||||||||||||||||
Sbjct: 26 taagtagtagtgccgcaggtaa 47
