miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00754;mir-279;ABJB010738028.1/1547-1632 6945:Ixodes scapularis
(black-legged tick)
Length = 86
Score = 161 bits (81), Expect = 2e-39
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 5 tcgttgctattgatgactgtgcctctagtccatgtgaatctagctcatgactagatccac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 tcgttgctattgatgactgtgcctctagtccatgtgaatctagctcatgactagatccac 65
Query: 65 actcatccatagaagcggaac 85
|||||||||||||||||||||
Sbjct: 66 actcatccatagaagcggaac 86
>RF00754;mir-279;BABH01023670.1/7511-7596 7091:Bombyx mori
(domestic silkworm)
Length = 86
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 50 catgactagatccacactcatccatagaag 79
||||||||||||||||||||||||| ||||
Sbjct: 51 catgactagatccacactcatccatggaag 80
>RF00754;mir-279;ABLF01005773.1/5502-5409 7029:Acyrthosiphon pisum
(pea aphid)
Length = 94
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 50 catgactagatccacactcatccat 74
|||||||||||||||||||||||||
Sbjct: 59 catgactagatccacactcatccat 83
>RF00754;mir-279;AAJJ01000939.1/8868-8954 7070:Tribolium castaneum
(red flour beetle)
Length = 87
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 49 tcatgactagatccacactcatcca 73
|||||||||||||||||||||||||
Sbjct: 51 tcatgactagatccacactcatcca 75
>RF00948;mir-996;AADG05007607.1/6578-6670 7460:Apis mellifera
(honey bee)
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 tgactagatccacactcatcca 73
||||||||||||||||||||||
Sbjct: 58 tgactagatccacactcatcca 79
>RF00754;mir-279;AADG05007607.1/6579-6668 7460:Apis mellifera
(honey bee)
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 tgactagatccacactcatcca 73
||||||||||||||||||||||
Sbjct: 57 tgactagatccacactcatcca 78
