miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00720;mir-317;ABJB010210559.1/10170-10082 6945:Ixodes
scapularis (black-legged tick)
Length = 89
Score = 176 bits (89), Expect = 4e-44
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 9 ggcctcgcctgacagtgtaccaccctgagttcccacgtgcgtttgcccagtgtgaacaca 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggcctcgcctgacagtgtaccaccctgagttcccacgtgcgtttgcccagtgtgaacaca 60
Query: 69 gctggtggtatatcagtcagtcgcggcat 97
|||||||||||||||||||||||||||||
Sbjct: 61 gctggtggtatatcagtcagtcgcggcat 89
>RF00720;mir-317;ABLF01040770.1/5816-5924 7029:Acyrthosiphon pisum
(pea aphid)
Length = 109
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 60 gtgaacacagctggtggtatatcagt 85
|||||||||||||||||||| |||||
Sbjct: 72 gtgaacacagctggtggtatctcagt 97
>RF00720;mir-317;AADK01000441.1/12625-12537 7091:Bombyx mori
(domestic silkworm)
Length = 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 60 gtgaacacagctggtggtatatcagt 85
|||||||||||||||||||| |||||
Sbjct: 52 gtgaacacagctggtggtatctcagt 77
>RF00720;mir-317;AADG05001988.1/60488-60578 7460:Apis mellifera
(honey bee)
Length = 91
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 60 gtgaacacagctggtggtatatcagt 85
|||||||||||||||||||| |||||
Sbjct: 54 gtgaacacagctggtggtatctcagt 79
>RF00720;mir-317;AAGE02012640.1/88438-88525 7159:Aedes aegypti
(yellow fever mosquito)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 60 gtgaacacagctggtggtatatcagt 85
|||||||||||||||||||| |||||
Sbjct: 51 gtgaacacagctggtggtatctcagt 76
>RF00720;mir-317;AAJJ01000475.1/38254-38168 7070:Tribolium
castaneum (red flour beetle)
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 60 gtgaacacagctggtggtatatcagt 85
|||||||||||||||||||| |||||
Sbjct: 50 gtgaacacagctggtggtatctcagt 75
