miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00725;mir-iab-4;ABJB010512107.1/48251-48167 6945:Ixodes
scapularis (black-legged tick)
Length = 85
Score = 168 bits (85), Expect = 9e-42
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 6 gcggcgcctcccgttcgtatactgagtgtatcctgagtgtttaattttccggtatacctt 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcggcgcctcccgttcgtatactgagtgtatcctgagtgtttaattttccggtatacctt 60
Query: 66 cagtatacgtaacgggggacccgga 90
|||||||||||||||||||||||||
Sbjct: 61 cagtatacgtaacgggggacccgga 85
>RF00725;mir-iab-4;ABKP02025153.1/22654-22737 377271:Anopheles
gambiae M
Length = 84
Score = 67.9 bits (34), Expect = 2e-11
Identities = 53/58 (91%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 21 cgtatactgagtgtatcctgagtgtttaattttccggtataccttcagtatacgtaac 78
|||||||||| ||||||||||||| | | || ||||||||||||||||||||||||||
Sbjct: 16 cgtatactgaatgtatcctgagtgct-acttatccggtataccttcagtatacgtaac 72
>RF00725;mir-iab-4;AAJJ01001135.1/10616-10533 7070:Tribolium
castaneum (red flour beetle)
Length = 84
Score = 67.9 bits (34), Expect = 2e-11
Identities = 53/58 (91%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 21 cgtatactgagtgtatcctgagtgtttaattttccggtataccttcagtatacgtaac 78
|||||||||| |||||||||||||||| | | |||||||||||||||||||||||||
Sbjct: 16 cgtatactgaatgtatcctgagtgttttctgt-ccggtataccttcagtatacgtaac 72
>RF00725;mir-iab-4;AAPU01010953.1/219687-219770 7230:Drosophila
mojavensis
Length = 84
Score = 60.0 bits (30), Expect = 6e-09
Identities = 52/58 (89%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 21 cgtatactgagtgtatcctgagtgtttaattttccggtataccttcagtatacgtaac 78
|||||||||| |||||||||||||| | | | |||||||||||||||||||||||||
Sbjct: 16 cgtatactgaatgtatcctgagtgtatcctat-ccggtataccttcagtatacgtaac 72
>RF00725;mir-iab-4;ABLF01001794.1/37283-37372 7029:Acyrthosiphon
pisum (pea aphid)
Length = 90
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 53 tccggtataccttcagtatacgtaac 78
||||||||||||||||||||||||||
Sbjct: 53 tccggtataccttcagtatacgtaac 78
>RF00725;mir-iab-4;AADK01004318.1/3463-3550 7091:Bombyx mori
(domestic silkworm)
Length = 88
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 53 tccggtataccttcagtatacgtaac 78
||||||||||||||||||||||||||
Sbjct: 51 tccggtataccttcagtatacgtaac 76
