miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00727;bantam;AAJJ01000881.1/39195-39283 7070:Tribolium
castaneum (red flour beetle)
Length = 89
Score = 65.9 bits (33), Expect = 9e-11
Identities = 58/64 (90%), Gaps = 3/64 (4%)
Strand = Plus / Plus
Query: 24 gttttctcagtgatctgccagatattatttgaatttctgagatcattgtgaaagctgatt 83
|||||| ||||||| || ||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 18 gttttcacagtgatttgacagatat-atttga--ttctgagatcattgtgaaagctgatt 74
Query: 84 ttgt 87
||||
Sbjct: 75 ttgt 78
>RF00727;bantam;AAZO01005717.1/66950-67042 121224:Pediculus
humanus corporis (human body louse)
Length = 93
Score = 63.9 bits (32), Expect = 4e-10
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 24 gttttctcagtgatctgccagatattatttgaatttctgagatcattgtgaaagctgatt 83
|||||| || |||| ||||||||| | |||| ||||||||||||||||||||||||||
Sbjct: 18 gttttcacaatgatttgccagatagtttttgttattctgagatcattgtgaaagctgatt 77
Query: 84 ttgt 87
||||
Sbjct: 78 ttgt 81
>RF00727;bantam;AAZX01004974.1/17134-17222 7425:Nasonia
vitripennis (jewel wasp)
Length = 89
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 58 ttctgagatcattgtgaaagctgattttgt 87
||||||||||||||||||||||||||||||
Sbjct: 49 ttctgagatcattgtgaaagctgattttgt 78
>RF00727;bantam;AADG05005002.1/2155-2243 7460:Apis mellifera
(honey bee)
Length = 89
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 58 ttctgagatcattgtgaaagctgattttgt 87
||||||||||||||||||||||||||||||
Sbjct: 49 ttctgagatcattgtgaaagctgattttgt 78
>RF00727;bantam;ABJB010305858.1/1270-1184 6945:Ixodes scapularis
(black-legged tick)
Length = 87
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 59 tctgagatcattgtgaaagctgattttgt 87
|||||||||||||||||||||||||||||
Sbjct: 51 tctgagatcattgtgaaagctgattttgt 79
>RF00727;bantam;AADK01008828.1/6468-6379 7091:Bombyx mori
(domestic silkworm)
Length = 90
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 58 ttctgagatcattgtgaaagctgattttgt 87
|||||||||||||||||||||| |||||||
Sbjct: 50 ttctgagatcattgtgaaagctaattttgt 79
>RF00727;bantam;AASC02061937.1/7510-7417 6500:Aplysia californica
(California sea hare)
Length = 94
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 59 tctgagatcattgtgaaagctgattttgt 87
|||||||||||||||||| ||||||||||
Sbjct: 54 tctgagatcattgtgaaaactgattttgt 82
>RF00727;bantam;ABLF01005214.1/5435-5342 7029:Acyrthosiphon pisum
(pea aphid)
Length = 94
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 58 ttctgagatcattgtgaaagctgattt 84
|||||||||||||||||||||| ||||
Sbjct: 54 ttctgagatcattgtgaaagctaattt 80
>RF00727;bantam;AAWU01005949.1/119500-119406 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 95
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 61 tgagatcattgtgaaagctgattttgt 87
|||||||||| ||||||||||||||||
Sbjct: 56 tgagatcattttgaaagctgattttgt 82
>RF00727;bantam;AAGE02003301.1/208408-208314 7159:Aedes aegypti
(yellow fever mosquito)
Length = 95
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 61 tgagatcattgtgaaagctgattttgt 87
|||||||||| ||||||||||||||||
Sbjct: 57 tgagatcattttgaaagctgattttgt 83
>RF00727;bantam;AAPU01011505.1/2277-2366 7230:Drosophila
mojavensis
Length = 90
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 61 tgagatcattgtgaaagctgattttgt 87
|||||||||| ||||||||||||||||
Sbjct: 53 tgagatcattttgaaagctgattttgt 79
>RF00727;bantam;AANI01017339.1/10975-11064 7244:Drosophila virilis
Length = 90
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 61 tgagatcattgtgaaagctgattttgt 87
|||||||||| ||||||||||||||||
Sbjct: 52 tgagatcattttgaaagctgattttgt 78
