miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00103;mir-1;AAJJ01000046.1/50771-50844 7070:Tribolium castaneum
(red flour beetle)
Length = 74
Score = 65.9 bits (33), Expect = 9e-11
Identities = 58/66 (87%), Gaps = 4/66 (6%)
Strand = Plus / Plus
Query: 15 gttccgtgcttccttacttcccatagtcaaatgacaaaacgtatggaatgtaaagaagta 74
||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 7 gttccgtgcttccttacttcccatagtgcttt----aaacgtatggaatgtaaagaagta 62
Query: 75 tggagc 80
||||||
Sbjct: 63 tggagc 68
>RF00103;mir-1;BAAB01105211.1/2094-2168 7091:Bombyx mori (domestic
silkworm)
Length = 75
Score = 61.9 bits (31), Expect = 1e-09
Identities = 59/66 (89%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 15 gttccgtgcttccttacttcccatagtcaaatgacaaaacgtatggaatgtaaagaagta 74
|||||||||||||||||||||||||||| | || || | |||||||||||||||||||
Sbjct: 7 gttccgtgcttccttacttcccatagtc-attg--taatcatatggaatgtaaagaagta 63
Query: 75 tggagc 80
||||||
Sbjct: 64 tggagc 69
>RF00103;mir-1;AAZX01000650.1/30055-30128 7425:Nasonia vitripennis
(jewel wasp)
Length = 74
Score = 61.9 bits (31), Expect = 1e-09
Identities = 59/67 (88%), Gaps = 6/67 (8%)
Strand = Plus / Plus
Query: 15 gttccgtgcttccttacttcccatagt-caaatgacaaaacgtatggaatgtaaagaagt 73
||||||||||||||||||||||||||| || |||| |||||||||||||||||||
Sbjct: 7 gttccgtgcttccttacttcccatagtgcacgtgac-----gtatggaatgtaaagaagt 61
Query: 74 atggagc 80
|||||||
Sbjct: 62 atggagc 68
>RF00103;mir-1;AADG05005577.1/859-932 7460:Apis mellifera (honey
bee)
Length = 74
Score = 58.0 bits (29), Expect = 2e-08
Identities = 57/66 (86%), Gaps = 4/66 (6%)
Strand = Plus / Plus
Query: 15 gttccgtgcttccttacttcccatagtcaaatgacaaaacgtatggaatgtaaagaagta 74
||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 7 gttccgtgcttccttacttcccatagtg----gatgcgacgtatggaatgtaaagaagta 62
Query: 75 tggagc 80
||||||
Sbjct: 63 tggagc 68
>RF00103;mir-1;ABLF01045264.1/8417-8511 7029:Acyrthosiphon pisum
(pea aphid)
Length = 95
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 53 acgtatggaatgtaaagaagtatggagc 80
||||||||||||||||||||||||||||
Sbjct: 65 acgtatggaatgtaaagaagtatggagc 92
>RF00103;mir-1;AAZO01007144.1/49277-49350 121224:Pediculus humanus
corporis (human body louse)
Length = 74
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 tatggaatgtaaagaagtatggagc 80
|||||||||||||||||||||||||
Sbjct: 44 tatggaatgtaaagaagtatggagc 68
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tccgtgcttccttacttcccata 39
|||||||||||||||||||||||
Sbjct: 9 tccgtgcttccttacttcccata 31
>RF00103;mir-1;AAGE02025061.1/66260-66336 7159:Aedes aegypti
(yellow fever mosquito)
Length = 77
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 tatggaatgtaaagaagtatggagc 80
|||||||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatggagc 71
>RF00103;mir-1;ABKP02019312.1/70476-70554 377271:Anopheles gambiae
M
Length = 79
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 tatggaatgtaaagaagtatggagc 80
|||||||||||||||||||||||||
Sbjct: 49 tatggaatgtaaagaagtatggagc 73
>RF00103;mir-1;ABKQ02015823.1/27063-26985 377270:Anopheles gambiae
S
Length = 79
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 tatggaatgtaaagaagtatggagc 80
|||||||||||||||||||||||||
Sbjct: 49 tatggaatgtaaagaagtatggagc 73
>RF00103;mir-1;AAPT01020974.1/21428-21504 7222:Drosophila
grimshawi
Length = 77
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 tatggaatgtaaagaagtatggagc 80
|||||||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatggagc 71
>RF00103;mir-1;AAPU01010689.1/17805-17881 7230:Drosophila
mojavensis
Length = 77
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 tatggaatgtaaagaagtatggagc 80
|||||||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatggagc 71
>RF00103;mir-1;ABJB010316955.1/9942-10021 6945:Ixodes scapularis
(black-legged tick)
Length = 80
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 gtatggaatgtaaagaagtatggag 79
|||||||||||||||||||||||||
Sbjct: 49 gtatggaatgtaaagaagtatggag 73
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 ccgtgcttccttacttcccata 39
||||||||||||||||||||||
Sbjct: 10 ccgtgcttccttacttcccata 31
>RF00103;mir-1;ABEP02026713.1/2484-2559 7739:Branchiostoma
floridae (Florida lancelet)
Length = 76
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 gtatggaatgtaaagaagtatg 76
||||||||||||||||||||||
Sbjct: 45 gtatggaatgtaaagaagtatg 66
