miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;AC006250.4/85478-85629 3702:Arabidopsis thaliana
           (thale cress)
          Length = 152

 Score = 60.0 bits (30), Expect = 8e-09
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 85  tttgcggttcaataaagctgtgggaagata 114
           ||||||||||||||||||||||||||||||
Sbjct: 117 tttgcggttcaataaagctgtgggaagata 146



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 17 tattcttccacggctttcttgaactgca 44
          ||||||||||| ||||||||||||||||
Sbjct: 6  tattcttccacagctttcttgaactgca 33




>RF00648;MIR396;AASG02007435.1/277-442 3988:Ricinus communis (castor
           bean)
          Length = 166

 Score = 60.0 bits (30), Expect = 8e-09
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 85  tttgcggttcaataaagctgtgggaagata 114
           ||||||||||||||||||||||||||||||
Sbjct: 131 tttgcggttcaataaagctgtgggaagata 160



 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 12 ctttctattcttccacggctttcttgaactgcat 45
          |||| ||||||||||| |||||||||||||||||
Sbjct: 1  ctttgtattcttccacagctttcttgaactgcat 34




>RF00648;MIR396;AC153121.15/56895-56790 3880:Medicago truncatula
           (barrel medic)
          Length = 106

 Score = 60.0 bits (30), Expect = 8e-09
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 85  tttgcggttcaataaagctgtgggaagata 114
           ||||||||||||||||||||||||||||||
Sbjct: 71  tttgcggttcaataaagctgtgggaagata 100



 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 12 ctttctattcttccacggctttcttgaactgcat 45
          |||| ||||||||||| |||||||||||||||||
Sbjct: 1  ctttgtattcttccacagctttcttgaactgcat 34




>RF00648;MIR396;AP010531.1/68027-68126 34305:Lotus japonicus
          Length = 100

 Score = 60.0 bits (30), Expect = 8e-09
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 85  tttgcggttcaataaagctgtgggaagata 114
           ||||||||||||||||||||||||||||||
Sbjct: 65  tttgcggttcaataaagctgtgggaagata 94



 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 12 ctttctattcttccacggctttcttgaactgcat 45
          |||| ||||||||||| |||||||||||||||||
Sbjct: 1  ctttgtattcttccacagctttcttgaactgcat 34




>RF00648;MIR396;ABIM01011222.1/24137-24037 3649:Carica papaya
           (papaya)
          Length = 101

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 86  ttgcggttcaataaagctgtgggaagata 114
           |||||||||||||||||||||||||||||
Sbjct: 67  ttgcggttcaataaagctgtgggaagata 95



 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 17 tattcttccacggctttcttgaactgcatg 46
          ||||||||||| ||||||||||||||||||
Sbjct: 6  tattcttccacagctttcttgaactgcatg 35




>RF00648;MIR396;AARH01002977.1/26105-26230 3694:Populus trichocarpa
          Length = 126

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 86  ttgcggttcaataaagctgtgggaagata 114
           |||||||||||||||||||||||||||||
Sbjct: 92  ttgcggttcaataaagctgtgggaagata 120



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 17 tattcttccacggctttcttgaactgca 44
          ||||||||||| ||||||||||||||||
Sbjct: 6  tattcttccacagctttcttgaactgca 33




>RF00648;MIR396;AM489352.2/7330-7448 29760:Vitis vinifera
          Length = 119

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 86  ttgcggttcaataaagctgtgggaagata 114
           |||||||||||||||||||||||||||||
Sbjct: 85  ttgcggttcaataaagctgtgggaagata 113



 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 12 ctttctattcttccacggctttcttgaactgcat 45
          |||| ||||||||||| |||||||||||||||||
Sbjct: 1  ctttgtattcttccacagctttcttgaactgcat 34




>RF00648;MIR396;AARH01007577.1/181152-181286 3694:Populus
           trichocarpa
          Length = 135

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 87  tgcggttcaataaagctgtgggaagata 114
           ||||||||||||||||||||||||||||
Sbjct: 102 tgcggttcaataaagctgtgggaagata 129



 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 12 ctttctattcttccacggctttcttgaactgca 44
          |||| ||||||||||| ||||||||||||||||
Sbjct: 1  ctttgtattcttccacagctttcttgaactgca 33




>RF00648;MIR396;EU941272.1/182-300 4577:Zea mays
          Length = 119

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 20 tcttccacggctttcttgaactgcatg 46
          |||||||| ||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactgcatg 35




>RF00648;MIR396;ABXC01002982.1/44228-44122 4558:Sorghum bicolor
          (sorghum)
          Length = 107

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 20 tcttccacggctttcttgaactgcatg 46
          |||||||| ||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactgcatg 35




>RF00648;MIR396;ABXC01006376.1/116039-116148 4558:Sorghum bicolor
          (sorghum)
          Length = 110

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 20 tcttccacggctttcttgaactgcat 45
          |||||||| |||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactgcat 34




>RF00648;MIR396;AAAA02018332.1/10514-10398 39946:Oryza sativa
          Indica Group
          Length = 117

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 20 tcttccacggctttcttgaactgcat 45
          |||||||| |||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactgcat 34