miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00104;mir-10;AAJJ01000198.1/34838-34768 7070:Tribolium
castaneum (red flour beetle)
Length = 71
Score = 67.9 bits (34), Expect = 2e-11
Identities = 65/73 (89%), Gaps = 3/73 (4%)
Strand = Plus / Plus
Query: 13 ctacatctaccctgtagatccgaatttgtagttg-catcacaagacaaattcggttctag 71
||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||
Sbjct: 1 ctacatctaccctgtagatccgaatttgt--ttgaaatcaggcgacaaattcggttctag 58
Query: 72 agaggttcgtgtg 84
||||||| |||||
Sbjct: 59 agaggtttgtgtg 71
>RF00104;mir-10;ABJB011126277.1/3833-3903 6945:Ixodes scapularis
(black-legged tick)
Length = 71
Score = 61.9 bits (31), Expect = 1e-09
Identities = 66/75 (88%), Gaps = 7/75 (9%)
Strand = Plus / Plus
Query: 13 ctacatctaccctgtagatccgaatttgtagttgcatcacaag---acaaattcggttct 69
||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||
Sbjct: 1 ctacatctaccctgtagatccgaatttgt--ctgca--acaagactacaaattcggttct 56
Query: 70 agagaggttcgtgtg 84
||||||||| |||||
Sbjct: 57 agagaggtttgtgtg 71
>RF00104;mir-10;AAPT01019387.1/166139-166214 7222:Drosophila
grimshawi
Length = 76
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 55 gacaaattcggttctagagaggttcgtgtg 84
|||||||||||||||||||||||| |||||
Sbjct: 47 gacaaattcggttctagagaggtttgtgtg 76
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 tctaccctgtagatccgaatttgt 41
||||||||||||||||||||||||
Sbjct: 6 tctaccctgtagatccgaatttgt 29
>RF00104;mir-10;ABKQ02021837.1/5843-5769 377270:Anopheles gambiae
S
Length = 75
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 13 ctacatctaccctgtagatccgaatttgt 41
||||||| |||||||||||||||||||||
Sbjct: 1 ctacatccaccctgtagatccgaatttgt 29
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 56 acaaattcggttctagagaggttcgtgtg 84
||||||||||||||||||||||| |||||
Sbjct: 47 acaaattcggttctagagaggtttgtgtg 75
>RF00104;mir-10;AAQB01008633.1/164536-164458 7260:Drosophila
willistoni
Length = 79
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 13 ctacatctaccctgtagatccgaatttgt 41
|||| ||||||||||||||||||||||||
Sbjct: 1 ctacgtctaccctgtagatccgaatttgt 29
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 55 gacaaattcggttctagagaggtt 78
||||||||||||||||||||||||
Sbjct: 48 gacaaattcggttctagagaggtt 71
>RF00104;mir-10;AC165428.1/216964-216881 7668:Strongylocentrotus
purpuratus
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 14 tacatctaccctgtagatccgaatttgt 41
|||||| |||||||||||||||||||||
Sbjct: 2 tacatcaaccctgtagatccgaatttgt 29
>RF00104;mir-10;AAPU01011054.1/176581-176658 7230:Drosophila
mojavensis
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 tctaccctgtagatccgaatttgt 41
||||||||||||||||||||||||
Sbjct: 6 tctaccctgtagatccgaatttgt 29
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 55 gacaaattcggttctagagaggtt 78
||||||||||||||||||||||||
Sbjct: 47 gacaaattcggttctagagaggtt 70
>RF00104;mir-10;AAGU02055274.1/837-762 9785:Loxodonta africana
(African savanna elephant)
Length = 76
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 taccctgtagatccgaatttgt 41
||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgt 29
>RF00104;mir-10;AADN02014571.1/896-822 9031:Gallus gallus
(chicken)
Length = 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 taccctgtagatccgaatttgt 41
||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgt 29
>RF00104;mir-10;AC145793.2/105735-105809 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 taccctgtagatccgaatttgt 41
||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgt 29
>RF00104;mir-10;AC148590.12/25796-25721 7924:Amia calva (bowfin)
Length = 76
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 taccctgtagatccgaatttgt 41
||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgt 29
>RF00104;mir-10;AAVX01627291.1/678-603 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 taccctgtagatccgaatttgt 41
||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgt 29
>RF00104;mir-10;AC150390.2/218469-218395 7739:Branchiostoma
floridae (Florida lancelet)
Length = 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 taccctgtagatccgaatttgt 41
||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgt 29
