miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00667;mir-33;AAPN01437665.1/3526-3458 9258:Ornithorhynchus
anatinus (platypus)
Length = 69
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 gtgcattgtagttgcattgcacgtt 45
|||||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcacgtt 30
>RF00667;mir-33;AAIY01417522.1/685-752 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 68
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 gtgcattgtagttgcattgcacgtt 45
|||||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcacgtt 30
>RF00667;mir-33;AAWU01038467.1/41288-41214 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 75
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 gtgcattgtagttgcattgcacgtt 45
|||||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcacgtt 30
>RF00667;mir-33;ABQO010273055.1/1298-1232 9315:Macropus eugenii
(tammar wallaby)
Length = 67
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 gtgcattgtagttgcattgcacgt 44
||||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcacgt 29
>RF00667;mir-33;CAAE01014738.1/1624047-1623979 99883:Tetraodon
nigroviridis
Length = 69
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 gtgcattgtagttgcattgcacgt 44
||||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcacgt 29
>RF00667;mir-33;CAAB01001000.1/62134-62064 31033:Takifugu rubripes
Length = 71
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 gtgcattgtagttgcattgcacgt 44
||||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcacgt 29
>RF00667;mir-33;AANH01011106.1/1499-1563 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 65
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 21 gtgcattgtagttgcattgcacgttgtc 48
||||||||||||||||||||| ||||||
Sbjct: 6 gtgcattgtagttgcattgcatgttgtc 33
>RF00667;mir-33;AABS01001128.1/11040-10976 7719:Ciona intestinalis
Length = 65
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 tgtgcattgtagttgcattgcac 42
|||||||||||||||||||||||
Sbjct: 5 tgtgcattgtagttgcattgcac 27
>RF00667;mir-33;AAGE02018815.1/108790-108863 7159:Aedes aegypti
(yellow fever mosquito)
Length = 74
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 16 cccgtgtgcattgtagttgcattgcac 42
|||| ||||||||||||||||||||||
Sbjct: 1 cccgggtgcattgtagttgcattgcac 27
>RF00667;mir-33;AACT01006707.1/8663-8725 51511:Ciona savignyi
Length = 63
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 gtgcattgtagttgcattgcac 42
||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcac 27
>RF00667;mir-33;AADK01019309.1/4596-4529 7091:Bombyx mori
(domestic silkworm)
Length = 68
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 gtgcattgtagttgcattgcac 42
||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcac 27
>RF00667;mir-33;AADG05009493.1/1176-1111 7460:Apis mellifera
(honey bee)
Length = 66
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 tgtgcattgtagttgcattgca 41
||||||||||||||||||||||
Sbjct: 5 tgtgcattgtagttgcattgca 26
>RF00667;mir-33;ABKP02018093.1/235-307 377271:Anopheles gambiae M
Length = 73
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 gtgcattgtagttgcattgcac 42
||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcac 27
