miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00047;mir-2;ABLF01009126.1/4810-4742 7029:Acyrthosiphon pisum
(pea aphid)
Length = 69
Score = 73.8 bits (37), Expect = 2e-13
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 1 ccgtcaaaatggatgtgaagtggnnnnnnnnactattcatatcacagccactttgatgag 60
||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 5 ccgtcaaaatggatgtgaagtggttttttttactattcatatcacagccactttgatgag 64
Query: 61 c 61
|
Sbjct: 65 c 65
>RF00047;mir-2;AAZO01007079.1/40323-40390 121224:Pediculus humanus
corporis (human body louse)
Length = 68
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 35 attcatatcacagccactttgatga 59
|||||||||||||||||||||||||
Sbjct: 38 attcatatcacagccactttgatga 62
>RF00047;mir-2;BABH01007323.1/6047-5982 7091:Bombyx mori (domestic
silkworm)
Length = 66
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 36 ttcatatcacagccactttgatg 58
|||||||||||||||||||||||
Sbjct: 37 ttcatatcacagccactttgatg 59
>RF00047;mir-2;AAJJ01001714.1/2416-2480 7070:Tribolium castaneum
(red flour beetle)
Length = 65
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 39 atatcacagccactttgatgagc 61
|||||||||||||||||||||||
Sbjct: 39 atatcacagccactttgatgagc 61
>RF00047;mir-2;AADG05000005.1/25311-25372 7460:Apis mellifera
(honey bee)
Length = 62
Score = 42.1 bits (21), Expect = 7e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 37 tcatatcacagccactttgatgagc 61
|||||||||||||| ||||||||||
Sbjct: 34 tcatatcacagccattttgatgagc 58
