miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AP009725.1/8577-8386 34305:Lotus japonicus
Length = 192
Score = 121 bits (61), Expect = 7e-27
Identities = 73/77 (94%)
Strand = Plus / Plus
Query: 187 tggtgtgcttctgatccaacgatgcgggagctgcattcagtcgtgactgtcacgtcttgg 246
|||||||||||||||||||||||||||||||||||||||||| | ||||||| | |||||
Sbjct: 106 tggtgtgcttctgatccaacgatgcgggagctgcattcagtcatcactgtcatggcttgg 165
Query: 247 actgaaggggcctcttc 263
|||||||||||||||||
Sbjct: 166 actgaaggggcctcttc 182
Score = 91.7 bits (46), Expect = 6e-18
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 60 ggaaggggctcacttcagtccagtccgagtcggtgaaaaatgactgaaactcagctgctg 119
|||||||||||||||||||||||| |||| |||| || ||| |||| ||||||||||||
Sbjct: 8 ggaaggggctcacttcagtccagttcgaggcggtagaagatggctgagactcagctgctg 67
Query: 120 actcgttggctcgagagttcaccatt 145
||||||||| ||||||| |||||||
Sbjct: 68 actcgttggttcgagagcacaccatt 93
>RF00638;MIR159;CAAP02000776.1/6894-7088 29760:Vitis vinifera
Length = 195
Score = 75.8 bits (38), Expect = 4e-13
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 198 tgatccaacgatgcgggagctgcattcagtcgtgactgtcacgtcttggactgaaggg 255
|||||||||||||| |||||||| |||||| || |||||||||||||||||||||||
Sbjct: 119 tgatccaacgatgcaggagctgcgttcagttatggctgtcacgtcttggactgaaggg 176
>RF00638;MIR159;AASG02014601.1/2536-2726 3988:Ricinus communis
(castor bean)
Length = 191
Score = 52.0 bits (26), Expect = 5e-06
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 198 tgatccaacgatgcgggagctgcattcagtcgtgactgtcacgtcttggactgaaggg 255
||||||||||| || ||||||| |||||| || |||||| ||||||||||||||||
Sbjct: 115 tgatccaacgaagctggagctgtgttcagttatggctgtcatgtcttggactgaaggg 172
