miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00661;mir-31;ABKQ02012146.1/10104-10027 377270:Anopheles gambiae
S
Length = 78
Score = 113 bits (57), Expect = 7e-25
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 39 aaattggcaacttggcaagatgttggcatagctgaaagttttgagtttagctattcaact 98
||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||
Sbjct: 2 aaattggcaacttggcaagatgttggcatagctaaaagatttggatttagctattcaact 61
Query: 99 tcttgtctatttttcca 115
|||||| ||||||||||
Sbjct: 62 tcttgtttatttttcca 78
>RF00661;mir-31;ABEG01018473.1/17089-17170 135651:Caenorhabditis
brenneri
Length = 82
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 51 tggcaagatgttggcatagctgaa 74
||||||||||||||||||||||||
Sbjct: 14 tggcaagatgttggcatagctgaa 37
>RF00661;mir-31;ABIR01000861.1/40343-40422 6334:Trichinella
spiralis
Length = 80
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 ggcaagatgttggcatagctgaa 74
|||||||||||||||||||||||
Sbjct: 15 ggcaagatgttggcatagctgaa 37
>RF00661;mir-31;AAQA01000036.1/3121-3003 6279:Brugia malayi
Length = 119
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 ggcaagatgttggcatagctgaa 74
|||||||||||||||||||||||
Sbjct: 15 ggcaagatgttggcatagctgaa 37
>RF00661;mir-31;ABLE02017251.1/2159-2248 281687:Caenorhabditis
japonica
Length = 90
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 ggcaagatgttggcatagctgaa 74
|||||||||||||||||||||||
Sbjct: 15 ggcaagatgttggcatagctgaa 37
>RF00661;mir-31;AF025464.1/2448-2533 6239:Caenorhabditis elegans
Length = 86
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 ggcaagatgttggcatagctgaa 74
|||||||||||||||||||||||
Sbjct: 15 ggcaagatgttggcatagctgaa 37
>RF00661;mir-31;AAGD02002064.1/2567-2487 31234:Caenorhabditis
remanei
Length = 81
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 ggcaagatgttggcatagctgaa 74
|||||||||||||||||||||||
Sbjct: 15 ggcaagatgttggcatagctgaa 37
>RF00661;mir-31;ABEG01018473.1/18882-18994 135651:Caenorhabditis
brenneri
Length = 113
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 ggcaagatgttggcatagctgaa 74
|||||||||||||||||||||||
Sbjct: 15 ggcaagatgttggcatagctgaa 37
>RF00661;mir-31;ABKE01002614.1/3132-3048 54126:Pristionchus
pacificus
Length = 85
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 ggcaagatgttggcatagctga 73
||||||||||||||||||||||
Sbjct: 15 ggcaagatgttggcatagctga 36
>RF00661;mir-31;AAWZ01002824.1/52915-52993 28377:Anolis
carolinensis (green anole)
Length = 79
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 ggcaagatgttggcatagctga 73
||||||||||||||||||||||
Sbjct: 15 ggcaagatgttggcatagctga 36
>RF00661;mir-31;CAAK05021429.1/259-339 7955:Danio rerio
(zebrafish)
Length = 81
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 tggcaagatgttggcatagctg 72
||||||||||||||||||||||
Sbjct: 14 tggcaagatgttggcatagctg 35
>RF00661;mir-31;ABEP02037830.1/78220-78140 7739:Branchiostoma
floridae (Florida lancelet)
Length = 81
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 tggcaagatgttggcatagctg 72
||||||||||||||||||||||
Sbjct: 14 tggcaagatgttggcatagctg 35
