miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00711;mir-449;AAGE02012646.1/4275-4404 7159:Aedes aegypti (yellow
fever mosquito)
Length = 130
Score = 256 bits (129), Expect = 6e-68
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 1 caaggcaatacgctatggcagtgtggttagctggttgtgtagaactttggggggcttccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caaggcaatacgctatggcagtgtggttagctggttgtgtagaactttggggggcttccg 60
Query: 61 tggcgttcgcgcgcacacgggggctcagattcacaaccactatccgccctgccgccgcga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tggcgttcgcgcgcacacgggggctcagattcacaaccactatccgccctgccgccgcga 120
Query: 121 ggtgccagg 129
|||||||||
Sbjct: 121 ggtgccagg 129
>RF00711;mir-449;ABKQ02014207.1/244697-244790 377270:Anopheles
gambiae S
Length = 94
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 8 atacgctatggcagtgtggttagctggttgtgt 40
||||||| |||||||||||||||||||||||||
Sbjct: 9 atacgctctggcagtgtggttagctggttgtgt 41
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 90 ttcacaaccactatccgccctgccgccgcg 119
|||||| |||||||||||||||||| ||||
Sbjct: 54 ttcacagccactatccgccctgccgtcgcg 83
>RF00711;mir-449;AAPQ01006467.1/383882-383780 7220:Drosophila
erecta
Length = 103
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 11 cgctatggcagtgtggttagctggttgtgtag 42
|||| |||||||||||||||||||||||||||
Sbjct: 11 cgctttggcagtgtggttagctggttgtgtag 42
>RF00711;mir-449;AAQB01008630.1/408110-408004 7260:Drosophila
willistoni
Length = 107
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 11 cgctatggcagtgtggttagctggttgtgtag 42
|||| |||||||||||||||||||||||||||
Sbjct: 11 cgctttggcagtgtggttagctggttgtgtag 42
>RF00711;mir-449;AAFS01000411.1/37510-37407 46245:Drosophila
pseudoobscura pseudoobscura
Length = 104
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 11 cgctatggcagtgtggttagctggttgtgtag 42
|||| |||||||||||||||||||||||||||
Sbjct: 11 cgctttggcagtgtggttagctggttgtgtag 42
>RF00711;mir-449;AAPP01019533.1/13885-13988 7217:Drosophila
ananassae
Length = 104
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 11 cgctatggcagtgtggttagctggttgtgtag 42
|||| |||||||||||||||||||||||||||
Sbjct: 11 cgctttggcagtgtggttagctggttgtgtag 42
>RF00711;mir-449;AASS01031694.1/773-875 7240:Drosophila simulans
Length = 103
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 11 cgctatggcagtgtggttagctggttgtgtag 42
|||| |||||||||||||||||||||||||||
Sbjct: 11 cgctttggcagtgtggttagctggttgtgtag 42
>RF00711;mir-449;AAZX01003771.1/10900-10991 7425:Nasonia
vitripennis (jewel wasp)
Length = 92
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 16 tggcagtgtggttagctggttgtgtag 42
|||||||||||||||||||||||||||
Sbjct: 16 tggcagtgtggttagctggttgtgtag 42
>RF00711;mir-449;BABH01019946.1/3350-3261 7091:Bombyx mori
(domestic silkworm)
Length = 90
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 16 tggcagtgtggttagctggttgtgta 41
||||||||||||||||||||||||||
Sbjct: 16 tggcagtgtggttagctggttgtgta 41
>RF00711;mir-449;AANI01014607.1/367710-367617 7244:Drosophila
virilis
Length = 94
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 11 cgctatggcagtgtggttagctggttgtgt 40
|||| |||||||||||||||||||||||||
Sbjct: 11 cgctttggcagtgtggttagctggttgtgt 40
>RF00711;mir-449;AAZO01004205.1/1293-1391 121224:Pediculus humanus
corporis (human body louse)
Length = 99
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 tggcagtgtggttagctggttgtgt 40
|||||||||||||||||||||||||
Sbjct: 16 tggcagtgtggttagctggttgtgt 40
>RF00711;mir-449;AAJJ01000475.1/25339-25252 7070:Tribolium
castaneum (red flour beetle)
Length = 88
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 tggcagtgtggttagctggttgtgt 40
|||||||||||||||||||||||||
Sbjct: 16 tggcagtgtggttagctggttgtgt 40
>RF00711;mir-449;AAQA01000334.1/14819-14733 6279:Brugia malayi
Length = 87
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 tggcagtgtggttagctggttgt 38
|||||||||||||||||||||||
Sbjct: 16 tggcagtgtggttagctggttgt 38
