miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AARH01005662.1/95261-95577 3694:Populus
          trichocarpa
          Length = 317

 Score = 61.9 bits (31), Expect = 1e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 7  tgtttggaatgaagtttgatccaagatcctt 37
          |||||||||||||||||||||||||||||||
Sbjct: 3  tgtttggaatgaagtttgatccaagatcctt 33



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 59  gatctcggaccaggcttcattc 80
           ||||||||||||||||||||||
Sbjct: 288 gatctcggaccaggcttcattc 309




>RF00075;mir-166;AARH01007982.1/90633-90310 3694:Populus
          trichocarpa
          Length = 324

 Score = 61.9 bits (31), Expect = 1e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 7  tgtttggaatgaagtttgatccaagatcctt 37
          |||||||||||||||||||||||||||||||
Sbjct: 3  tgtttggaatgaagtttgatccaagatcctt 33



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 59  gatctcggaccaggcttcattc 80
           ||||||||||||||||||||||
Sbjct: 295 gatctcggaccaggcttcattc 316




>RF00075;mir-166;CAAP02007291.1/14711-14590 29760:Vitis vinifera
          Length = 122

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 7  tgtttggaatgaagtttgatccaagatcctt 37
          |||||||||||| ||||||||||||||||||
Sbjct: 3  tgtttggaatgaggtttgatccaagatcctt 33



 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 59  gatctcggaccaggcttcattcttgaca 86
           |||||||||||||||||||||| |||||
Sbjct: 93  gatctcggaccaggcttcattcctgaca 120




>RF00075;mir-166;AC235255.1/12904-12739 3847:Glycine max (soybean)
          Length = 166

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 7  tgtttggaatgaagtttgatccaagatc 34
          |||||||||||| |||||||||||||||
Sbjct: 3  tgtttggaatgaggtttgatccaagatc 30



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 59  gatctcggaccaggcttcattc 80
           ||||||||||||||||||||||
Sbjct: 137 gatctcggaccaggcttcattc 158




>RF00075;mir-166;AAAA02030332.1/11899-12019 39946:Oryza sativa
           Indica Group
          Length = 121

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 57  gggatctcggaccaggcttcattc 80
           ||||||||||||||||||||||||
Sbjct: 90  gggatctcggaccaggcttcattc 113




>RF00075;mir-166;AC138001.2/40361-40495 39947:Oryza sativa
          Japonica Group
          Length = 135

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 7  tgtttggaatgaagtttgatccaagatc 34
          ||||||||||| ||||||||||||||||
Sbjct: 3  tgtttggaatgcagtttgatccaagatc 30




>RF00075;mir-166;DQ908436.1/479-591 3635:Gossypium hirsutum (upland
           cotton)
          Length = 113

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 58  ggatctcggaccaggcttcattc 80
           |||||||||||||||||||||||
Sbjct: 83  ggatctcggaccaggcttcattc 105




>RF00075;mir-166;ABIM01012777.1/4514-4390 3649:Carica papaya
           (papaya)
          Length = 125

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 54  ttagggatctcggaccaggcttcattc 80
           |||| ||||||||||||||||||||||
Sbjct: 91  ttagtgatctcggaccaggcttcattc 117




>RF00075;mir-166;AP008218.1/18370254-18370388 39947:Oryza sativa
           Japonica Group
          Length = 135

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 58  ggatctcggaccaggcttcattc 80
           |||||||||||||||||||||||
Sbjct: 105 ggatctcggaccaggcttcattc 127




>RF00075;mir-166;ABIM01018276.1/2199-2062 3649:Carica papaya
           (papaya)
          Length = 138

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 59  gatctcggaccaggcttcattc 80
           ||||||||||||||||||||||
Sbjct: 109 gatctcggaccaggcttcattc 130




>RF00075;mir-166;AARH01003608.1/24010-23917 3694:Populus
          trichocarpa
          Length = 94

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 59 gatctcggaccaggcttcattc 80
          ||||||||||||||||||||||
Sbjct: 65 gatctcggaccaggcttcattc 86




>RF00075;mir-166;AARH01004299.1/36070-36161 3694:Populus
          trichocarpa
          Length = 92

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 59 gatctcggaccaggcttcattc 80
          ||||||||||||||||||||||
Sbjct: 63 gatctcggaccaggcttcattc 84




>RF00075;mir-166;AASG02003618.1/9737-9830 3988:Ricinus communis
          (castor bean)
          Length = 94

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 59 gatctcggaccaggcttcattc 80
          ||||||||||||||||||||||
Sbjct: 65 gatctcggaccaggcttcattc 86




>RF00075;mir-166;AC148487.14/34671-34762 3880:Medicago truncatula
          (barrel medic)
          Length = 92

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 59 gatctcggaccaggcttcattc 80
          ||||||||||||||||||||||
Sbjct: 63 gatctcggaccaggcttcattc 84




>RF00075;mir-166;AC148816.3/87512-87332 3880:Medicago truncatula
           (barrel medic)
          Length = 181

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 59  gatctcggaccaggcttcattc 80
           ||||||||||||||||||||||
Sbjct: 152 gatctcggaccaggcttcattc 173




>RF00075;mir-166;AM448542.2/4591-4502 29760:Vitis vinifera
          Length = 90

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 59 gatctcggaccaggcttcattc 80
          ||||||||||||||||||||||
Sbjct: 61 gatctcggaccaggcttcattc 82




>RF00075;mir-166;AC226041.1/11826-11708 4641:Musa acuminata
          Length = 119

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 59  gatctcggaccaggcttcattc 80
           ||||||||||||||||||||||
Sbjct: 90  gatctcggaccaggcttcattc 111




>RF00075;mir-166;EU945393.1/89-202 4577:Zea mays
          Length = 114

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 59  gatctcggaccaggcttcattc 80
           ||||||||||||||||||||||
Sbjct: 85  gatctcggaccaggcttcattc 106




>RF00075;mir-166;EU956093.1/113-209 4577:Zea mays
          Length = 97

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 59 gatctcggaccaggcttcattc 80
          ||||||||||||||||||||||
Sbjct: 68 gatctcggaccaggcttcattc 89




>RF00075;mir-166;AY501432.1/1-122 4577:Zea mays
          Length = 122

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 59  gatctcggaccaggcttcattc 80
           ||||||||||||||||||||||
Sbjct: 95  gatctcggaccaggcttcattc 116




>RF00075;mir-166;AY501431.1/1-212 4577:Zea mays
          Length = 212

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 59  gatctcggaccaggcttcattc 80
           ||||||||||||||||||||||
Sbjct: 185 gatctcggaccaggcttcattc 206




>RF00075;mir-166;ABXC01000193.1/181030-180913 4558:Sorghum bicolor
           (sorghum)
          Length = 118

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 59  gatctcggaccaggcttcattc 80
           ||||||||||||||||||||||
Sbjct: 89  gatctcggaccaggcttcattc 110




>RF00075;mir-166;ABXC01006910.1/39676-39486 4558:Sorghum bicolor
           (sorghum)
          Length = 191

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 59  gatctcggaccaggcttcattc 80
           ||||||||||||||||||||||
Sbjct: 162 gatctcggaccaggcttcattc 183




>RF00075;mir-166;ABXC01002952.1/108749-108653 4558:Sorghum bicolor
          (sorghum)
          Length = 97

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 59 gatctcggaccaggcttcattc 80
          ||||||||||||||||||||||
Sbjct: 68 gatctcggaccaggcttcattc 89




>RF00075;mir-166;AK251614.1/146-305 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 160

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 59  gatctcggaccaggcttcattc 80
           ||||||||||||||||||||||
Sbjct: 131 gatctcggaccaggcttcattc 152




>RF00075;mir-166;AAAA02020902.1/104196-104017 39946:Oryza sativa
           Indica Group
          Length = 180

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 59  gatctcggaccaggcttcattc 80
           ||||||||||||||||||||||
Sbjct: 151 gatctcggaccaggcttcattc 172




>RF00075;mir-166;AP003614.2/6887-6709 39947:Oryza sativa Japonica
           Group
          Length = 179

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 59  gatctcggaccaggcttcattc 80
           ||||||||||||||||||||||
Sbjct: 150 gatctcggaccaggcttcattc 171




>RF00075;mir-166;AP008208.1/26148565-26148667 39947:Oryza sativa
          Japonica Group
          Length = 103

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 59 gatctcggaccaggcttcattc 80
          ||||||||||||||||||||||
Sbjct: 74 gatctcggaccaggcttcattc 95