miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00720;mir-317;AAGE02012640.1/88438-88525 7159:Aedes aegypti
(yellow fever mosquito)
Length = 88
Score = 172 bits (87), Expect = 5e-43
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 2 gaatttcggctaccgggatacaccctgtgctcgctttgcattcgaaactagtgaacacag 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaatttcggctaccgggatacaccctgtgctcgctttgcattcgaaactagtgaacacag 60
Query: 62 ctggtggtatctcagtggccctaatcc 88
|||||||||||||||||||||||||||
Sbjct: 61 ctggtggtatctcagtggccctaatcc 87
>RF00720;mir-317;AAAB01008859.1/3281503-3281595 180454:Anopheles
gambiae str. PEST
Length = 93
Score = 63.9 bits (32), Expect = 3e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 46 aaactagtgaacacagctggtggtatctcagtggcc 81
||||||||||||||| ||||||||||||||||||||
Sbjct: 50 aaactagtgaacacatctggtggtatctcagtggcc 85
>RF00720;mir-317;AANI01014607.1/383695-383607 7244:Drosophila
virilis
Length = 89
Score = 58.0 bits (29), Expect = 2e-08
Identities = 60/68 (88%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 16 gggatacaccctgtgctcgctttgcat--tcgaaactagtgaacacagctggtggtatct 73
|||||||||||||||||||||||| || | || | ||||||||||||||||||||||
Sbjct: 15 gggatacaccctgtgctcgctttgaattgtgcaagcaagtgaacacagctggtggtatc- 73
Query: 74 cagtggcc 81
||||||||
Sbjct: 74 cagtggcc 81
>RF00720;mir-317;ABLF01040770.1/5816-5924 7029:Acyrthosiphon pisum
(pea aphid)
Length = 109
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 51 agtgaacacagctggtggtatctcagt 77
|||||||||||||||||||||||||||
Sbjct: 71 agtgaacacagctggtggtatctcagt 97
>RF00720;mir-317;AADK01000441.1/12625-12537 7091:Bombyx mori
(domestic silkworm)
Length = 89
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 51 agtgaacacagctggtggtatctcagt 77
|||||||||||||||||||||||||||
Sbjct: 51 agtgaacacagctggtggtatctcagt 77
>RF00720;mir-317;AAJJ01000475.1/38254-38168 7070:Tribolium
castaneum (red flour beetle)
Length = 87
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 51 agtgaacacagctggtggtatctcagt 77
|||||||||||||||||||||||||||
Sbjct: 49 agtgaacacagctggtggtatctcagt 75
>RF00720;mir-317;AAZO01004205.1/873-973 121224:Pediculus humanus
corporis (human body louse)
Length = 101
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 51 agtgaacacagctggtggtatctcag 76
||||||||||||||||||||||||||
Sbjct: 63 agtgaacacagctggtggtatctcag 88
>RF00720;mir-317;AADG05001988.1/60488-60578 7460:Apis mellifera
(honey bee)
Length = 91
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 52 gtgaacacagctggtggtatctcagt 77
||||||||||||||||||||||||||
Sbjct: 54 gtgaacacagctggtggtatctcagt 79
>RF00720;mir-317;AAEU02000013.1/76417-76507 7245:Drosophila yakuba
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 60/70 (85%), Gaps = 5/70 (7%)
Strand = Plus / Plus
Query: 16 gggatacaccctgtgctcgctttgcat----tcgaaactagtgaacacagctggtggtat 71
|||||||||||||||||||||||| || | || | |||||||||||||||||||||
Sbjct: 15 gggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggtat 74
Query: 72 ctcagtggcc 81
| ||||||||
Sbjct: 75 c-cagtggcc 83
>RF00720;mir-317;AAIZ01005964.1/1594-1504 7234:Drosophila
persimilis
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 gggatacaccctgtgctcgctttg 39
||||||||||||||||||||||||
Sbjct: 15 gggatacaccctgtgctcgctttg 38
>RF00720;mir-317;AAPU01011031.1/18314-18226 7230:Drosophila
mojavensis
Length = 89
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 gggatacaccctgtgctcgctttg 39
||||||||||||||||||||||||
Sbjct: 15 gggatacaccctgtgctcgctttg 38
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 agtgaacacagctggtggtatc 72
||||||||||||||||||||||
Sbjct: 52 agtgaacacagctggtggtatc 73
>RF00720;mir-317;AAPT01018372.1/102669-102760 7222:Drosophila
grimshawi
Length = 92
Score = 46.1 bits (23), Expect = 7e-05
Identities = 30/31 (96%), Gaps = 1/31 (3%)
Strand = Plus / Plus
Query: 51 agtgaacacagctggtggtatctcagtggcc 81
|||||||||||||||||||||| ||||||||
Sbjct: 55 agtgaacacagctggtggtatc-cagtggcc 84
>RF00720;mir-317;ABJB010210559.1/10170-10082 6945:Ixodes
scapularis (black-legged tick)
Length = 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 52 gtgaacacagctggtggtatctcagt 77
|||||||||||||||||||| |||||
Sbjct: 52 gtgaacacagctggtggtatatcagt 77
