miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;ABIM01027778.1/13122-13246 3649:Carica papaya
(papaya)
Length = 125
Score = 71.9 bits (36), Expect = 3e-12
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 117 tcctccatgacctcgagccagacaacattcctctca 152
||||||||||||||||||||||||||||||||||||
Sbjct: 38 tcctccatgacctcgagccagacaacattcctctca 3
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 24 aatgaagcctggtccgagaatcattt 49
||||||||||||||||||||||||||
Sbjct: 116 aatgaagcctggtccgagaatcattt 91
>RF00075;mir-166;AARH01003279.1/141842-141699 3694:Populus
trichocarpa
Length = 144
Score = 61.9 bits (31), Expect = 3e-09
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 118 cctccatgacctcgagccagacaacattcctctca 152
|||| ||||||||||||||||||||||||||||||
Sbjct: 37 cctcaatgacctcgagccagacaacattcctctca 3
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 24 aatgaagcctggtccgagaatcat 47
||||||||||||||||||||||||
Sbjct: 135 aatgaagcctggtccgagaatcat 112
>RF00075;mir-166;EU548914.1/298-397 3702:Arabidopsis thaliana (thale
cress)
Length = 100
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 119 ctccatgacctcgagccagacaacattcctct 150
|||||||||||||||||| |||||||||||||
Sbjct: 36 ctccatgacctcgagccaaacaacattcctct 5
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 24 aatgaagcctggtccgagaatcattt 49
||||||||||||||||||||||||||
Sbjct: 91 aatgaagcctggtccgagaatcattt 66
>RF00075;mir-166;AC189313.2/128870-128784 51351:Brassica rapa subsp.
pekinensis
Length = 87
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 122 catgacctcgagccagacaacattcctctca 152
|||||||||||||||||||||| ||||||||
Sbjct: 33 catgacctcgagccagacaacagtcctctca 3
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 24 aatgaagcctggtccgagaatcattt 49
||||||||||||||||||||||||||
Sbjct: 78 aatgaagcctggtccgagaatcattt 53
>RF00075;mir-166;AL590346.1/40100-40217 3702:Arabidopsis thaliana
(thale cress)
Length = 118
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 122 catgacctcgagccagacaacattcctctca 152
|||||||||||||||||||||| ||||||||
Sbjct: 33 catgacctcgagccagacaacaatcctctca 3
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 24 aatgaagcctggtccgagaatcat 47
||||||||||||||||||||||||
Sbjct: 109 aatgaagcctggtccgagaatcat 86
>RF00075;mir-166;EU548871.1/183-293 3702:Arabidopsis thaliana (thale
cress)
Length = 111
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 122 catgacctcgagccagacaacattcctctca 152
|||||||||||||||||||| ||||||||||
Sbjct: 33 catgacctcgagccagacaatattcctctca 3
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 24 aatgaagcctggtccgagaatcattt 49
||||||||||||||||||||||||||
Sbjct: 102 aatgaagcctggtccgagaatcattt 77
>RF00075;mir-166;AM464541.1/10325-10481 29760:Vitis vinifera
Length = 157
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 126 acctcgagccagacaacattcctctca 152
|||||||||||||||||||||||||||
Sbjct: 29 acctcgagccagacaacattcctctca 3
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 24 aatgaagcctggtccgagaatca 46
|||||||||||||||||||||||
Sbjct: 148 aatgaagcctggtccgagaatca 126
>RF00075;mir-166;AC140029.19/70482-70585 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 119 ctccatgacctcgagccagacaacattcctctca 152
|||||| ||||||||||||||||| |||||||||
Sbjct: 36 ctccatcacctcgagccagacaacgttcctctca 3
>RF00075;mir-166;FJ010939.2/353-450 52838:Musa balbisiana
Length = 98
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 122 catgacctcgagccagacaacattcc 147
||||||||||||||||||||||||||
Sbjct: 33 catgacctcgagccagacaacattcc 8
>RF00075;mir-166;AARH01000156.1/300448-300294 3694:Populus
trichocarpa
Length = 155
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 124 tgacctcgagccagacaacattcctctca 152
|||||||||||||||||||||||| ||||
Sbjct: 31 tgacctcgagccagacaacattcccctca 3
>RF00075;mir-166;AASG02002547.1/1046-1166 3988:Ricinus communis
(castor bean)
Length = 121
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 124 tgacctcgagccagacaacattcctctca 152
|||||||||||||||||||||||| ||||
Sbjct: 31 tgacctcgagccagacaacattcccctca 3
>RF00075;mir-166;AP009261.1/72240-72093 4081:Solanum lycopersicum
Length = 148
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 124 tgacctcgagccagacaacattcctctca 152
|||||||||||||||||||||||| ||||
Sbjct: 31 tgacctcgagccagacaacattcccctca 3
>RF00075;mir-166;AY599420.1/1-185 4096:Nicotiana sylvestris (wood
tobacco)
Length = 185
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 124 tgacctcgagccagacaacattcctctca 152
|||||||||||||||||||||||| ||||
Sbjct: 29 tgacctcgagccagacaacattcccctca 1
>RF00075;mir-166;AC216447.1/33715-33853 3694:Populus trichocarpa
Length = 139
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 118 cctccatgacctcgagccagacaacattcctctca 152
||||||||||||||| ||||||| | |||||||||
Sbjct: 37 cctccatgacctcgacccagacagcgttcctctca 3
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 24 aatgaagcctggtccgagaatcattt 49
|||| |||||||||||||||||||||
Sbjct: 130 aatggagcctggtccgagaatcattt 105
>RF00075;mir-166;BABK01014008.1/1327-1223 34305:Lotus japonicus
Length = 105
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 126 acctcgagccagacaacattcctctca 152
||||||||||||||||| |||||||||
Sbjct: 29 acctcgagccagacaacgttcctctca 3
>RF00075;mir-166;EU956093.1/113-209 4577:Zea mays
Length = 97
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 126 acctcgagccagacaacattcctctca 152
|||||||||||||||||||||| ||||
Sbjct: 29 acctcgagccagacaacattcccctca 3
>RF00075;mir-166;ABXC01002952.1/108749-108653 4558:Sorghum bicolor
(sorghum)
Length = 97
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 126 acctcgagccagacaacattcctctca 152
|||||||||||||||||||||| ||||
Sbjct: 29 acctcgagccagacaacattcccctca 3
>RF00075;mir-166;AP008208.1/26148565-26148667 39947:Oryza sativa
Japonica Group
Length = 103
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 126 acctcgagccagacaacattcctctca 152
|||||||||||||||||||||| ||||
Sbjct: 29 acctcgagccagacaacattcccctca 3
>RF00075;mir-166;ABIM01020443.1/6232-6097 3649:Carica papaya
(papaya)
Length = 136
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 127 cctcgagccagacaacattcctctca 152
||||||||||||||||||||| ||||
Sbjct: 28 cctcgagccagacaacattcccctca 3
>RF00075;mir-166;AARH01006070.1/215270-215403 3694:Populus
trichocarpa
Length = 134
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 127 cctcgagccagacaacattcctctca 152
||||||||||||||||||||| ||||
Sbjct: 28 cctcgagccagacaacattcccctca 3
>RF00075;mir-166;AARH01001165.1/83261-83385 3694:Populus trichocarpa
Length = 125
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 127 cctcgagccagacaacattcctctca 152
||||||||||||||||||||| ||||
Sbjct: 28 cctcgagccagacaacattcccctca 3
>RF00075;mir-166;AASG02010073.1/7999-8131 3988:Ricinus communis
(castor bean)
Length = 133
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 127 cctcgagccagacaacattcctctca 152
||||||||||||||||||||| ||||
Sbjct: 28 cctcgagccagacaacattcccctca 3
>RF00075;mir-166;AC144592.26/52711-52605 3880:Medicago truncatula
(barrel medic)
Length = 107
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 127 cctcgagccagacaacattcctctca 152
||||||||||||||||||||| ||||
Sbjct: 28 cctcgagccagacaacattcccctca 3
>RF00075;mir-166;BABK01006649.1/1239-1127 34305:Lotus japonicus
Length = 113
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 127 cctcgagccagacaacattcctctca 152
||||||||||||||||||||| ||||
Sbjct: 28 cctcgagccagacaacattcccctca 3
>RF00075;mir-166;AM468140.2/16750-16595 29760:Vitis vinifera
Length = 156
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 127 cctcgagccagacaacattcctctca 152
||||||||||||||||||||| ||||
Sbjct: 28 cctcgagccagacaacattcccctca 3
>RF00075;mir-166;CAAP02000145.1/77043-77192 29760:Vitis vinifera
Length = 150
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 127 cctcgagccagacaacattcctctca 152
||||||||||||||||||||| ||||
Sbjct: 28 cctcgagccagacaacattcccctca 3
