miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00241;mir-8;BAAB01175925.1/123-47 7091:Bombyx mori (domestic
silkworm)
Length = 77
Score = 153 bits (77), Expect = 5e-37
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 12 aacggttcgcatcttaccgggcagcattagagtcctgtctatattttctaatactgtcag 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aacggttcgcatcttaccgggcagcattagagtcctgtctatattttctaatactgtcag 60
Query: 72 gtaaagatgtcgtccgc 88
|||||||||||||||||
Sbjct: 61 gtaaagatgtcgtccgc 77
>RF00241;mir-8;AAPU01010182.1/5430-5508 7230:Drosophila mojavensis
Length = 79
Score = 69.9 bits (35), Expect = 6e-12
Identities = 65/74 (87%), Gaps = 2/74 (2%)
Strand = Plus / Plus
Query: 16 gttcgcatcttaccgggcagcattagagtcctgtctatattt--tctaatactgtcaggt 73
|||| |||||||||||||||||||||| |||||| | | | ||||||||||||||||
Sbjct: 5 gttcacatcttaccgggcagcattagattcctgttttaaataactctaatactgtcaggt 64
Query: 74 aaagatgtcgtccg 87
||||||||||||||
Sbjct: 65 aaagatgtcgtccg 78
>RF00241;mir-8;AAAB01008986.1/3020387-3020310 180454:Anopheles
gambiae str. PEST
Length = 78
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 56 tttctaatactgtcaggtaaagatgtcgtccg 87
||||||||||||||||||||||||||||||||
Sbjct: 46 tttctaatactgtcaggtaaagatgtcgtccg 77
>RF00241;mir-8;AAJJ01001355.1/29616-29540 7070:Tribolium castaneum
(red flour beetle)
Length = 77
Score = 61.9 bits (31), Expect = 1e-09
Identities = 59/67 (88%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 21 catcttaccgggcagcattagagtcctgtctatattttctaatactgtcaggtaaagatg 80
|||||||||||||||||||||| | | | |||| || ||||||||||||||||||||||
Sbjct: 10 catcttaccgggcagcattagattacattttatactt-ctaatactgtcaggtaaagatg 68
Query: 81 tcgtccg 87
|| ||||
Sbjct: 69 tcctccg 75
>RF00241;mir-8;AAQB01006282.1/186530-186609 7260:Drosophila
willistoni
Length = 80
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 58 tctaatactgtcaggtaaagatgtcgtccg 87
||||||||||||||||||||||||||||||
Sbjct: 50 tctaatactgtcaggtaaagatgtcgtccg 79
>RF00241;mir-8;AADG05004155.1/1299-1373 7460:Apis mellifera (honey
bee)
Length = 75
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 57 ttctaatactgtcaggtaaagatgtcgtc 85
|||||||||||||||||||||||||||||
Sbjct: 44 ttctaatactgtcaggtaaagatgtcgtc 72
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 16 gttcgcatcttaccgggcagcattaga 42
|||| ||||||||||||||||||||||
Sbjct: 5 gttcacatcttaccgggcagcattaga 31
>RF00241;mir-8;ABJB010621523.1/197-271 6945:Ixodes scapularis
(black-legged tick)
Length = 75
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 56 tttctaatactgtcaggtaaagatgtc 82
|||||||||||||||||||||||||||
Sbjct: 42 tttctaatactgtcaggtaaagatgtc 68
>RF00241;mir-8;AAZO01008551.1/16828-16905 121224:Pediculus humanus
corporis (human body louse)
Length = 78
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 catcttaccgggcagcattaga 42
||||||||||||||||||||||
Sbjct: 10 catcttaccgggcagcattaga 31
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 57 ttctaatactgtcaggtaaagatgtc 82
||||||||||||||||||| ||||||
Sbjct: 46 ttctaatactgtcaggtaatgatgtc 71
