miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;EF145817.1/52-230 3694:Populus trichocarpa
Length = 179
Score = 79.8 bits (40), Expect = 7e-15
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 72 cgaattggatcccgccttgcatcaactgaatcggaggccg 111
||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 cgaattggatcccgccttgcatcaactgaatcggaggccg 171
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 1 gcggtctctaattcgcttggtgcaggtcgggaac 34
||||||||| ||||||||||||||||||||||||
Sbjct: 7 gcggtctctgattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;CU302345.1/65608-65728 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 77.8 bits (39), Expect = 3e-14
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 73 gaattggatcccgccttgcatcaactgaatcggaggccg 111
|||||||||||||||||||||||||||||||||||||||
Sbjct: 75 gaattggatcccgccttgcatcaactgaatcggaggccg 113
Score = 69.9 bits (35), Expect = 7e-12
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 1 gcggtctctaattcgcttggtgcaggtcgggaacc 35
|||||||||||||||||||||||||||||||||||
Sbjct: 7 gcggtctctaattcgcttggtgcaggtcgggaacc 41
>RF00677;MIR168;ABIM01019962.1/1-76 3649:Carica papaya (papaya)
Length = 76
Score = 71.9 bits (36), Expect = 2e-12
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 72 cgaattggatcccgccttgcatcaactgaatcggag 107
||||||||||||||||||||||||||||||||||||
Sbjct: 29 cgaattggatcccgccttgcatcaactgaatcggag 64
>RF00677;MIR168;AARH01009157.1/137211-137057 3694:Populus
trichocarpa
Length = 155
Score = 69.9 bits (35), Expect = 7e-12
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 73 gaattggatcccgccttgcatcaactgaatcggag 107
|||||||||||||||||||||||||||||||||||
Sbjct: 109 gaattggatcccgccttgcatcaactgaatcggag 143
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 1 gcggtctctaattcgcttggtgcaggtcgggaac 34
||||||||||||||||||||||||||||||||||
Sbjct: 7 gcggtctctaattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900031.1/134-271 50463:Cardamine hirsuta (hairy
bittercress)
Length = 138
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 73 gaattggatcccgccttgcatcaactgaatcgga 106
||||||||||||||||||||||||||||||||||
Sbjct: 91 gaattggatcccgccttgcatcaactgaatcgga 124
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 attcgcttggtgcaggtcgggaac 34
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900011.1/89-224 71322:Calepina irregularis
Length = 136
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 78 ggatcccgccttgcatcaactgaatcggaggccg 111
||||||||||||||||||||||||||||||||||
Sbjct: 95 ggatcccgccttgcatcaactgaatcggaggccg 128
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 gcggtctctaattcgcttggtgcaggtcgggaac 34
|||||||| ||||||||||||||||||||||||
Sbjct: 7 gcggtctcggattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AASG02009178.1/8089-7934 3988:Ricinus communis
(castor bean)
Length = 156
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 1 gcggtctctaattcgcttggtgcaggtcgggaac 34
||||||||||||||||||||||||||||||||||
Sbjct: 7 gcggtctctaattcgcttggtgcaggtcgggaac 40
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 73 gaattggatcccgccttgcatcaactgaatcg 104
||||||||||||||||||||||||||||||||
Sbjct: 110 gaattggatcccgccttgcatcaactgaatcg 141
>RF00677;MIR168;CAAP02004587.1/23864-24010 29760:Vitis vinifera
Length = 147
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 3 ggtctctaattcgcttggtgcaggtcgggaaccg 36
||||||||||||||||||||||||||||||||||
Sbjct: 9 ggtctctaattcgcttggtgcaggtcgggaaccg 42
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 79 gatcccgccttgcatcaactgaatcggag 107
|||||||||||||||||||||||||||||
Sbjct: 107 gatcccgccttgcatcaactgaatcggag 135
>RF00677;MIR168;AM900039.1/133-271 98038:Thellungiella halophila
Length = 139
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 75 attggatcccgccttgcatcaactgaatcggag 107
|||||||||||||||||||||||||||||||||
Sbjct: 93 attggatcccgccttgcatcaactgaatcggag 125
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 attcgcttggtgcaggtcgggaac 34
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900025.1/123-261 81982:Pseudoturritis turrita
Length = 139
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 75 attggatcccgccttgcatcaactgaatcggag 107
|||||||||||||||||||||||||||||||||
Sbjct: 93 attggatcccgccttgcatcaactgaatcggag 125
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 attcgcttggtgcaggtcgggaac 34
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900027.1/105-243 71232:Erysimum cheiri
Length = 139
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 75 attggatcccgccttgcatcaactgaatcggag 107
|||||||||||||||||||||||||||||||||
Sbjct: 94 attggatcccgccttgcatcaactgaatcggag 126
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 attcgcttggtgcaggtcgggaacc 35
|||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaacc 41
>RF00677;MIR168;AM900030.1/155-291 264402:Capsella grandiflora
Length = 137
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 75 attggatcccgccttgcatcaactgaatcggag 107
|||||||||||||||||||||||||||||||||
Sbjct: 91 attggatcccgccttgcatcaactgaatcggag 123
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 attcgcttggtgcaggtcgggaacc 35
|||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaacc 41
>RF00677;MIR168;DQ108858.1/128-269 3702:Arabidopsis thaliana (thale
cress)
Length = 142
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 75 attggatcccgccttgcatcaactgaatcgga 106
||||||||||||||||||||||||||||||||
Sbjct: 97 attggatcccgccttgcatcaactgaatcgga 128
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 attcgcttggtgcaggtcgggaacc 35
|||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaacc 41
>RF00677;MIR168;AM900009.1/86-211 50463:Cardamine hirsuta (hairy
bittercress)
Length = 126
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 1 gcggtctctaattcgcttggtgcaggtcgggaac 34
||||||||| ||||||||||||||||||||||||
Sbjct: 7 gcggtctctgattcgcttggtgcaggtcgggaac 40
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 81 tcccgccttgcatcaactgaatc 103
|||||||||||||||||||||||
Sbjct: 88 tcccgccttgcatcaactgaatc 110
>RF00677;MIR168;AM900035.1/113-248 264416:Diplotaxis tenuifolia
Length = 136
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 75 attggatcccgccttgcatcaactgaatcggag 107
||||| |||||||||||||||||||||||||||
Sbjct: 90 attggctcccgccttgcatcaactgaatcggag 122
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 attcgcttggtgcaggtcggga 32
||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcggga 38
>RF00677;MIR168;AC232514.1/122335-122471 51351:Brassica rapa subsp.
pekinensis
Length = 137
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 75 attggatcccgccttgcatcaactgaatcggag 107
|||||||||||||||||||||| ||||||||||
Sbjct: 91 attggatcccgccttgcatcaaatgaatcggag 123
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 attcgcttggtgcaggtcgggaacc 35
|||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaacc 41
>RF00677;MIR168;AM900033.1/151-286 71322:Calepina irregularis
Length = 136
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 81 tcccgccttgcatcaactgaatcggag 107
|||||||||||||||||||||||||||
Sbjct: 98 tcccgccttgcatcaactgaatcggag 124
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 attcgcttggtgcaggtcgggaac 34
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900013.1/66-191 313683:Malcolmia maritima
Length = 126
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 gcggtctctaattcgcttggtgcaggtcgggaac 34
|||||||| ||||||||||||||||||||||||
Sbjct: 7 gcggtctcagattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AB020744.1/40369-40244 3702:Arabidopsis thaliana
(thale cress)
Length = 126
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 gcggtctctaattcgcttggtgcaggtcgggaac 34
|||||||| ||||||||||||||||||||||||
Sbjct: 7 gcggtctcggattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;CU302337.1/59396-59285 3880:Medicago truncatula
(barrel medic)
Length = 112
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 6 ctctaattcgcttggtgcaggtcgggaacc 35
|||| |||||||||||||||||||||||||
Sbjct: 12 ctctgattcgcttggtgcaggtcgggaacc 41
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 74 aattggatcccgccttgcatcaactgaatcggaggc 109
|||||||||| |||||||||||| |||||||||||
Sbjct: 67 aattggatcctgccttgcatcaatcgaatcggaggc 102
>RF00677;MIR168;AM900001.1/83-191 72657:Aethionema grandiflorum
Length = 109
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 79 gatcccgccttgcatcaactgaatc 103
|||||||||||||||||||||||||
Sbjct: 69 gatcccgccttgcatcaactgaatc 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 attcgcttggtgcaggtcgggaac 34
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900008.1/99-224 264402:Capsella grandiflora
Length = 126
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 attcgcttggtgcaggtcgggaac 34
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 85 gccttgcatcaactgaatcggag 107
|||||||||||||||||||||||
Sbjct: 92 gccttgcatcaactgaatcggag 114
>RF00677;MIR168;AM900024.1/109-239 72657:Aethionema grandiflorum
Length = 131
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 attcgcttggtgcaggtcgggaac 34
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 81 tcccgccttgcatcaactgaatcgga 106
|||||| |||||||||||||||||||
Sbjct: 92 tcccgctttgcatcaactgaatcgga 117
>RF00677;MIR168;BT069329.1/34-135 4577:Zea mays
Length = 102
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 78 ggatcccgccttgcatcaactgaatcggag 107
||||||||||||||| ||| ||||||||||
Sbjct: 61 ggatcccgccttgcaccaagtgaatcggag 90
>RF00677;MIR168;AP004886.3/116669-116566 39947:Oryza sativa Japonica
Group
Length = 104
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 78 ggatcccgccttgcatcaactgaatcggag 107
||||||||||||||| ||| ||||||||||
Sbjct: 63 ggatcccgccttgcaccaagtgaatcggag 92
