miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;BABK01022869.1/1081-990 34305:Lotus japonicus
Length = 92
Score = 127 bits (64), Expect = 4e-29
Identities = 80/84 (95%), Gaps = 1/84 (1%)
Strand = Plus / Minus
Query: 29 aggtgaaactgccacatgatctgatctttccacagcaagtgagggaagttaagatcatgc 88
||||||||||||||||||||||||||||||| || || | ||||||||||||||||||||
Sbjct: 83 aggtgaaactgccacatgatctgatctttccccaccatg-gagggaagttaagatcatgc 25
Query: 89 tggcagcttcaactggtagtggtg 112
||||||||||||||||||||||||
Sbjct: 24 tggcagcttcaactggtagtggtg 1
>RF00640;MIR167_1;AASG02005785.1/15088-15180 3988:Ricinus communis
(castor bean)
Length = 93
Score = 85.7 bits (43), Expect = 1e-16
Identities = 73/83 (87%)
Strand = Plus / Minus
Query: 30 ggtgaaactgccacatgatctgatctttccacagcaagtgagggaagttaagatcatgct 89
|||||||||||||||||||||||||| ||| || | || |||| | || ||||||||||
Sbjct: 83 ggtgaaactgccacatgatctgatctctcctcaacgagggaggaagatttagatcatgct 24
Query: 90 ggcagcttcaactggtagtggtg 112
|||||||||||||| ||||||||
Sbjct: 23 ggcagcttcaactgatagtggtg 1
>RF00640;MIR167_1;CAAP02000793.1/41456-41548 29760:Vitis vinifera
Length = 93
Score = 79.8 bits (40), Expect = 8e-15
Identities = 73/84 (86%)
Strand = Plus / Minus
Query: 29 aggtgaaactgccacatgatctgatctttccacagcaagtgagggaagttaagatcatgc 88
||||||||||||||||||||||||||| | || ||| || | ||||| |||||||||
Sbjct: 84 aggtgaaactgccacatgatctgatctctgttcacaaagggaagcaagtttagatcatgc 25
Query: 89 tggcagcttcaactggtagtggtg 112
||||||||||||||| ||||||||
Sbjct: 24 tggcagcttcaactgatagtggtg 1
>RF00640;MIR167_1;AARH01004314.1/38692-38599 3694:Populus
trichocarpa
Length = 94
Score = 73.8 bits (37), Expect = 5e-13
Identities = 74/85 (87%), Gaps = 1/85 (1%)
Strand = Plus / Minus
Query: 29 aggtgaaactgccacatgatctgat-ctttccacagcaagtgagggaagttaagatcatg 87
||||||||||||||||||||||| | |||||| || ||| |||| | | ||||||||||
Sbjct: 85 aggtgaaactgccacatgatctgtttctttcctcaacaaaggaggaaggctaagatcatg 26
Query: 88 ctggcagcttcaactggtagtggtg 112
|||||||||||||||| ||| ||||
Sbjct: 25 ctggcagcttcaactgatagaggtg 1
>RF00640;MIR167_1;CAAP02000379.1/24621-24714 29760:Vitis vinifera
Length = 94
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 70 agggaagttaagatcatgctggcagcttcaactggtagtggtg 112
||||||||| |||||||||||||||||||||||| || |||||
Sbjct: 43 agggaagttgagatcatgctggcagcttcaactgctactggtg 1
>RF00640;MIR167_1;AC225328.1/13792-13888 4081:Solanum lycopersicum
Length = 97
Score = 60.0 bits (30), Expect = 8e-09
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 74 aagttaagatcatgctggcagcttcaactggtagtggt 111
||||| |||||||||||||||||||||||| |||||||
Sbjct: 39 aagtttagatcatgctggcagcttcaactgctagtggt 2
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 37 ctgccacatgatctgatctttcc 59
|||||||||||||||||||||||
Sbjct: 80 ctgccacatgatctgatctttcc 58
>RF00640;MIR167_1;AARH01002853.1/45908-46003 3694:Populus
trichocarpa
Length = 96
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 80 agatcatgctggcagcttcaactggtagtggtg 112
|||||||||||||||||||||||| ||||||||
Sbjct: 33 agatcatgctggcagcttcaactgctagtggtg 1
>RF00640;MIR167_1;AARH01001059.1/157614-157519 3694:Populus
trichocarpa
Length = 96
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 80 agatcatgctggcagcttcaactggtagtggtg 112
|||||||||||||||||||||||| ||||||||
Sbjct: 33 agatcatgctggcagcttcaactgctagtggtg 1
>RF00640;MIR167_1;EU532400.1/147-239 3634:Gossypium barbadense
(sea-island cotton)
Length = 93
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 72 ggaagttaagatcatgctggcagcttcaactg 103
||||||| ||||||||||||||||||||||||
Sbjct: 41 ggaagtttagatcatgctggcagcttcaactg 10
>RF00640;MIR167_1;AC209507.1/126147-126250 4081:Solanum lycopersicum
Length = 104
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 74 aagttaagatcatgctggcagcttcaactggtagtg 109
||||| |||||||||||||||||||||||| |||||
Sbjct: 39 aagtttagatcatgctggcagcttcaactgctagtg 4
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 37 ctgccacatgatctgatctttcc 59
|||||||||||||||||||||||
Sbjct: 87 ctgccacatgatctgatctttcc 65
>RF00640;MIR167_1;ABIM01012099.1/6617-6710 3649:Carica papaya
(papaya)
Length = 94
Score = 54.0 bits (27), Expect = 5e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 74 aagttaagatcatgctggcagcttcaactggtagtggtg 112
||||| |||||||||||||||||||||||| || |||||
Sbjct: 39 aagtttagatcatgctggcagcttcaactgctactggtg 1
>RF00640;MIR167_1;AARH01008931.1/3492-3395 3694:Populus trichocarpa
Length = 98
Score = 54.0 bits (27), Expect = 5e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 74 aagttaagatcatgctggcagcttcaactggtagtggtg 112
||||| ||||||||||||||||||||||| ||||||||
Sbjct: 39 aagttcagatcatgctggcagcttcaactactagtggtg 1
>RF00640;MIR167_1;AASG02013390.1/4624-4525 3988:Ricinus communis
(castor bean)
Length = 100
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 80 agatcatgctggcagcttcaactggtagtggtg 112
|||||||||||||||||| ||||| ||||||||
Sbjct: 33 agatcatgctggcagctttaactgctagtggtg 1
>RF00640;MIR167_1;CAAP02001791.1/44208-44309 29760:Vitis vinifera
Length = 102
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 80 agatcatgctggcagcttcaactggtagtggtg 112
|||||||||||||||||||||||| || |||||
Sbjct: 33 agatcatgctggcagcttcaactgctattggtg 1
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 29 aggtgaaactgccacatgatctgatctttcc 59
|||||||||||||||||||||| |||||||
Sbjct: 93 aggtgaaactgccacatgatctagtctttcc 63
>RF00640;MIR167_1;ABIM01011014.1/4156-4251 3649:Carica papaya
(papaya)
Length = 96
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 76 gttaagatcatgctggcagcttca 99
||||||||||||||||||||||||
Sbjct: 37 gttaagatcatgctggcagcttca 14
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 30 ggtgaaactgccacatgatctgatctt 56
||||||||||||| |||||||||||||
Sbjct: 86 ggtgaaactgccatatgatctgatctt 60
>RF00640;MIR167_1;ABIM01018604.1/478-580 3649:Carica papaya (papaya)
Length = 103
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 80 agatcatgctggcagcttcaactg 103
||||||||||||||||||||||||
Sbjct: 33 agatcatgctggcagcttcaactg 10
>RF00640;MIR167_1;AASG02001065.1/6152-6064 3988:Ricinus communis
(castor bean)
Length = 89
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 80 agatcatgctggcagcttcaact 102
|||||||||||||||||||||||
Sbjct: 33 agatcatgctggcagcttcaact 11
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 29 aggtgaaactgccacatgatct 50
||||||||||||||||||||||
Sbjct: 80 aggtgaaactgccacatgatct 59
>RF00640;MIR167_1;AARH01012195.1/26948-26514 3694:Populus
trichocarpa
Length = 435
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 80 agatcatgctggcagcttcaac 101
||||||||||||||||||||||
Sbjct: 33 agatcatgctggcagcttcaac 12
>RF00640;MIR167_1;AC212802.1/77650-78085 3694:Populus trichocarpa
Length = 436
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 80 agatcatgctggcagcttcaac 101
||||||||||||||||||||||
Sbjct: 33 agatcatgctggcagcttcaac 12
>RF00640;MIR167_1;BABK01002345.1/2496-2649 34305:Lotus japonicus
Length = 154
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 80 agatcatgctggcagcttcaac 101
||||||||||||||||||||||
Sbjct: 33 agatcatgctggcagcttcaac 12
>RF00640;MIR167_1;AC225328.1/5014-5119 4081:Solanum lycopersicum
Length = 106
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 74 aagttaagatcatgctggcagcttca 99
||||| ||||||||||||||||||||
Sbjct: 39 aagtttagatcatgctggcagcttca 14
>RF00640;MIR167_1;CAAP02000801.1/49293-49646 29760:Vitis vinifera
Length = 354
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 80 agatcatgctggcagcttcaac 101
||||||||||||||||||||||
Sbjct: 33 agatcatgctggcagcttcaac 12
>RF00640;MIR167_1;ABXC01002438.1/140052-139788 4558:Sorghum bicolor
(sorghum)
Length = 265
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 80 agatcatgctggcagcttcaac 101
||||||||||||||||||||||
Sbjct: 33 agatcatgctggcagcttcaac 12
>RF00640;MIR167_1;ABXC01006864.1/41201-41318 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 80 agatcatgctggcagcttcaac 101
||||||||||||||||||||||
Sbjct: 33 agatcatgctggcagcttcaac 12
