miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST 


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AAAA02015954.1/10941-11097 39946:Oryza sativa
           Indica Group
          Length = 157

 Score = 48.1 bits (24), Expect = 6e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 12  atactccctccatcctagaatata 35
           ||||||||||||||||||||||||
Sbjct: 154 atactccctccatcctagaatata 131





>RF00906;MIR1122;AAAA02022081.1/28856-28717 39946:Oryza sativa
          Indica Group
          Length = 140

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 13 tactccctccatcctagaatataagga 39
          |||||||||||||||| ||||||||||
Sbjct: 5  tactccctccatcctaaaatataagga 31





>RF00906;MIR1122;ABRL01002360.1/2061-1952 65489:Oryza barthii
          Length = 110

 Score = 44.1 bits (22), Expect = 9e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 13  tactccctccatcctagaatataagg 38
           |||||||||||||||| |||||||||
Sbjct: 106 tactccctccatcctaaaatataagg 81





>RF00906;MIR1122;AAAA02035210.1/16587-16706 39946:Oryza sativa
           Indica Group
          Length = 120

 Score = 44.1 bits (22), Expect = 9e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 13  tactccctccatcctagaatataagg 38
           |||||||||||||||| |||||||||
Sbjct: 116 tactccctccatcctaaaatataagg 91