miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF415030.1/2907-2998 4577:Zea mays
Length = 92
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 23 gtactccctccgtttctatttatttgtcgc 52
||||||||||||||||| ||||||||||||
Sbjct: 4 gtactccctccgtttctttttatttgtcgc 33
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 24 tactccctccgtttctatttatttgtcgc 52
|||||||||||||||| ||||||||||||
Sbjct: 88 tactccctccgtttctttttatttgtcgc 60
>RF00906;MIR1122;EF165349.1/11426-11335 4577:Zea mays
Length = 92
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 24 tactccctccgtttctatttatttgtcgc 52
|||||||||||||||| ||||||||||||
Sbjct: 88 tactccctccgtttctttttatttgtcgc 60
>RF00906;MIR1122;BT060817.1/840-931 4577:Zea mays
Length = 92
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 24 tactccctccgtttctatttatttgtcgc 52
|||||||||||||||| ||||||||||||
Sbjct: 5 tactccctccgtttctttttatttgtcgc 33
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 24 tactccctccgtttctatttatttgtcgc 52
|||||||||||||||| ||||||||||||
Sbjct: 88 tactccctccgtttctttttatttgtcgc 60
>RF00906;MIR1122;BT062468.1/658-567 4577:Zea mays
Length = 92
Score = 48.1 bits (24), Expect = 3e-05
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 23 gtactccctccgtttctatttatttgtcgcccaatagttcaaatttgtacta 74
||||||||||||||||| |||| ||||||| ||||||||| |||| ||||
Sbjct: 4 gtactccctccgtttctttttagttgtcgctggatagttcaattttgcacta 55
>RF00906;MIR1122;EU971616.1/1158-1249 4577:Zea mays
Length = 92
Score = 46.1 bits (23), Expect = 1e-04
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 24 tactccctccgtttctatttatttgtcgcccaatagttcaaatttgtacta 74
|||||||||||||||| |||| ||||||| |||||| ||||||| ||||
Sbjct: 88 tactccctccgtttctttttagttgtcgctggatagtttaaatttgcacta 38
>RF01058;MIR806;AP008218.1/4987696-4987454 39947:Oryza sativa
Japonica Group
Length = 243
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 24 tactccctccgtttctatttatttgtcgcc 53
||||||||||||||||| |||||||||||
Sbjct: 2 tactccctccgtttctaaatatttgtcgcc 31
>RF00906;MIR1122;FJ188379.1/3521-3613 4513:Hordeum vulgare
Length = 93
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 83 catatattaaggaacggagggagtac 108
|||||||| |||||||||||||||||
Sbjct: 65 catatatttaggaacggagggagtac 90
>RF00906;MIR1122;AACV01009198.1/25225-25351 39947:Oryza sativa
Japonica Group
Length = 127
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 85 tatattaaggaacggagggagtacgt 110
||||||| ||||||||||||||||||
Sbjct: 27 tatattatggaacggagggagtacgt 2
