miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;EU945393.1/89-202 4577:Zea mays
Length = 114
Score = 157 bits (79), Expect = 4e-38
Identities = 106/111 (95%), Gaps = 3/111 (2%)
Strand = Plus / Plus
Query: 5 tctgagtggaatgttgtctggttcaaggtcttttgctttgtgatccatctgtgtagagct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tctgagtggaatgttgtctggttcaaggtcttttgctttgtgatccatctgtgtagagct 60
Query: 65 tcttagta-tccttggatctgc-agatctcggaccaggtttc-ttcccctc 112
||| |||| ||||||||||||| ||||||||||||||| ||| ||||||||
Sbjct: 61 tctaagtattccttggatctgcaagatctcggaccaggcttcattcccctc 111
>RF00075;mir-166;ABXC01000193.1/181030-180913 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 5 tctgagtggaatgttgtctggttcaaggtct 35
|||||||||||||||||||||||||||||||
Sbjct: 1 tctgagtggaatgttgtctggttcaaggtct 31
>RF00075;mir-166;AAAA02030332.1/11899-12019 39946:Oryza sativa
Indica Group
Length = 121
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 5 tctgagtggaatgttgtctggttcaaggtct 35
|||||||||||||||||||||||||||||||
Sbjct: 1 tctgagtggaatgttgtctggttcaaggtct 31
>RF00075;mir-166;AY501432.1/1-122 4577:Zea mays
Length = 122
Score = 60.0 bits (30), Expect = 7e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 7 tgagtggaatgttgtctggttcaaggtctt 36
||||||||||||||||||||||||||||||
Sbjct: 1 tgagtggaatgttgtctggttcaaggtctt 30
>RF00075;mir-166;AP008209.1/744073-744201 39947:Oryza sativa
Japonica Group
Length = 129
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 tctgagtggaatgttgtctggttcaagg 32
|||| |||||||||||||||||||||||
Sbjct: 1 tctgggtggaatgttgtctggttcaagg 28
