miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00725;mir-iab-4;AADK01004318.1/3463-3550 7091:Bombyx mori
(domestic silkworm)
Length = 88
Score = 174 bits (88), Expect = 1e-43
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1 gcgtcgccttctgtacgtatactgaatgtatcctgagtgcgcgattcttgtccggtatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcgtcgccttctgtacgtatactgaatgtatcctgagtgcgcgattcttgtccggtatac 60
Query: 61 cttcagtatacgtaacagaagatgacac 88
||||||||||||||||||||||||||||
Sbjct: 61 cttcagtatacgtaacagaagatgacac 88
>RF00725;mir-iab-4;AAJJ01001135.1/10616-10533 7070:Tribolium
castaneum (red flour beetle)
Length = 84
Score = 77.8 bits (39), Expect = 2e-14
Identities = 61/68 (89%), Gaps = 4/68 (5%)
Strand = Plus / Plus
Query: 11 ctgtacgtatactgaatgtatcctgagtgcgcgattcttgtccggtataccttcagtata 70
||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 11 ctgtacgtatactgaatgtatcctgagtgt----tttctgtccggtataccttcagtata 66
Query: 71 cgtaacag 78
||||||||
Sbjct: 67 cgtaacag 74
>RF00725;mir-iab-4;ABKP02025153.1/22654-22737 377271:Anopheles
gambiae M
Length = 84
Score = 75.8 bits (38), Expect = 8e-14
Identities = 57/63 (90%), Gaps = 4/63 (6%)
Strand = Plus / Plus
Query: 15 acgtatactgaatgtatcctgagtgcgcgattcttgtccggtataccttcagtatacgta 74
|||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||
Sbjct: 15 acgtatactgaatgtatcctgagtgc----tacttatccggtataccttcagtatacgta 70
Query: 75 aca 77
|||
Sbjct: 71 aca 73
>RF00725;mir-iab-4;ABLF01001794.1/37283-37372 7029:Acyrthosiphon
pisum (pea aphid)
Length = 90
Score = 61.9 bits (31), Expect = 1e-09
Identities = 61/70 (87%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 11 ctgtacgtatactgaatgtatcctgagtgcgcgattct--tgtccggtataccttcagta 68
||||||||||||| |||||||||||||||| || ||||||||||||||||||||
Sbjct: 11 ctgtacgtatactaaatgtatcctgagtgcattataaaactgtccggtataccttcagta 70
Query: 69 tacgtaacag 78
||||||||||
Sbjct: 71 tacgtaacag 80
>RF00725;mir-iab-4;AAPU01010953.1/219687-219770 7230:Drosophila
mojavensis
Length = 84
Score = 61.9 bits (31), Expect = 1e-09
Identities = 56/64 (87%), Gaps = 4/64 (6%)
Strand = Plus / Plus
Query: 14 tacgtatactgaatgtatcctgagtgcgcgattcttgtccggtataccttcagtatacgt 73
|||||||||||||||||||||||||| || | |||||||||||||||||||||||
Sbjct: 14 tacgtatactgaatgtatcctgagtgta----tcctatccggtataccttcagtatacgt 69
Query: 74 aaca 77
||||
Sbjct: 70 aaca 73
>RF00725;mir-iab-4;ABJB010512107.1/48251-48167 6945:Ixodes
scapularis (black-legged tick)
Length = 85
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 51 tccggtataccttcagtatacgtaac 76
||||||||||||||||||||||||||
Sbjct: 48 tccggtataccttcagtatacgtaac 73
