miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00725;mir-iab-4;AADK01004318.1/3463-3550 7091:Bombyx mori
(domestic silkworm)
Length = 88
Score = 174 bits (88), Expect = 1e-43
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 1 gtgtcatcttctgttacgtatactgaaggtataccggacaagaatcgcgcactcaggata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 gtgtcatcttctgttacgtatactgaaggtataccggacaagaatcgcgcactcaggata 29
Query: 61 cattcagtatacgtacagaaggcgacgc 88
||||||||||||||||||||||||||||
Sbjct: 28 cattcagtatacgtacagaaggcgacgc 1
>RF00725;mir-iab-4;AAJJ01001135.1/10616-10533 7070:Tribolium
castaneum (red flour beetle)
Length = 84
Score = 77.8 bits (39), Expect = 2e-14
Identities = 61/68 (89%), Gaps = 4/68 (5%)
Strand = Plus / Minus
Query: 11 ctgttacgtatactgaaggtataccggacaagaatcgcgcactcaggatacattcagtat 70
|||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 74 ctgttacgtatactgaaggtataccggacagaaa----acactcaggatacattcagtat 19
Query: 71 acgtacag 78
||||||||
Sbjct: 18 acgtacag 11
>RF00725;mir-iab-4;ABKP02025153.1/22654-22737 377271:Anopheles
gambiae M
Length = 84
Score = 75.8 bits (38), Expect = 8e-14
Identities = 57/63 (90%), Gaps = 4/63 (6%)
Strand = Plus / Minus
Query: 12 tgttacgtatactgaaggtataccggacaagaatcgcgcactcaggatacattcagtata 71
||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||
Sbjct: 73 tgttacgtatactgaaggtataccggataagta----gcactcaggatacattcagtata 18
Query: 72 cgt 74
|||
Sbjct: 17 cgt 15
>RF00725;mir-iab-4;ABLF01001794.1/37283-37372 7029:Acyrthosiphon
pisum (pea aphid)
Length = 90
Score = 61.9 bits (31), Expect = 1e-09
Identities = 61/70 (87%), Gaps = 2/70 (2%)
Strand = Plus / Minus
Query: 11 ctgttacgtatactgaaggtataccggaca--agaatcgcgcactcaggatacattcagt 68
|||||||||||||||||||||||||||||| || |||||||||||||||| |||
Sbjct: 80 ctgttacgtatactgaaggtataccggacagttttataatgcactcaggatacatttagt 21
Query: 69 atacgtacag 78
||||||||||
Sbjct: 20 atacgtacag 11
>RF00725;mir-iab-4;AAPU01010953.1/219687-219770 7230:Drosophila
mojavensis
Length = 84
Score = 61.9 bits (31), Expect = 1e-09
Identities = 56/64 (87%), Gaps = 4/64 (6%)
Strand = Plus / Minus
Query: 12 tgttacgtatactgaaggtataccggacaagaatcgcgcactcaggatacattcagtata 71
||||||||||||||||||||||||||| | || ||||||||||||||||||||||
Sbjct: 73 tgttacgtatactgaaggtataccggatagga----tacactcaggatacattcagtata 18
Query: 72 cgta 75
||||
Sbjct: 17 cgta 14
>RF00725;mir-iab-4;ABJB010512107.1/48251-48167 6945:Ixodes
scapularis (black-legged tick)
Length = 85
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 13 gttacgtatactgaaggtataccgga 38
||||||||||||||||||||||||||
Sbjct: 73 gttacgtatactgaaggtataccgga 48
