miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00104;mir-10;AAJJ01000198.1/34838-34768 7070:Tribolium
castaneum (red flour beetle)
Length = 71
Score = 99.6 bits (50), Expect = 6e-21
Identities = 69/75 (92%), Gaps = 4/75 (5%)
Strand = Plus / Plus
Query: 5 ctacatctaccctgtagatccgaatttgtttgaatataaacaagcgacaaattcggttct 64
|||||||||||||||||||||||||||||||||| | || |||||||||||||||||
Sbjct: 1 ctacatctaccctgtagatccgaatttgtttgaa----atcaggcgacaaattcggttct 56
Query: 65 agagaggtttgtgtg 79
|||||||||||||||
Sbjct: 57 agagaggtttgtgtg 71
>RF00104;mir-10;ABKQ02021837.1/5843-5769 377270:Anopheles gambiae
S
Length = 75
Score = 85.7 bits (43), Expect = 8e-17
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 5 ctacatctaccctgtagatccgaatttgtttgaatataaacaagcgacaaattcggttct 64
||||||| ||||||||||||||||||||||||||| || | | ||||||||||||||
Sbjct: 1 ctacatccaccctgtagatccgaatttgtttgaatttatattaataacaaattcggttct 60
Query: 65 agagaggtttgtgtg 79
|||||||||||||||
Sbjct: 61 agagaggtttgtgtg 75
>RF00104;mir-10;ABJB011126277.1/3833-3903 6945:Ixodes scapularis
(black-legged tick)
Length = 71
Score = 71.9 bits (36), Expect = 1e-12
Identities = 67/76 (88%), Gaps = 6/76 (7%)
Strand = Plus / Plus
Query: 5 ctacatctaccctgtagatccgaatttgtttgaatataaacaag-cgacaaattcggttc 63
||||||||||||||||||||||||||||| || |||||| | |||||||||||||
Sbjct: 1 ctacatctaccctgtagatccgaatttgtctg-----caacaagactacaaattcggttc 55
Query: 64 tagagaggtttgtgtg 79
||||||||||||||||
Sbjct: 56 tagagaggtttgtgtg 71
>RF00104;mir-10;AAPT01019387.1/166139-166214 7222:Drosophila
grimshawi
Length = 76
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 50 gacaaattcggttctagagaggtttgtgtg 79
||||||||||||||||||||||||||||||
Sbjct: 47 gacaaattcggttctagagaggtttgtgtg 76
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 tctaccctgtagatccgaatttgtt 34
|||||||||||||||||||||||||
Sbjct: 6 tctaccctgtagatccgaatttgtt 30
>RF00104;mir-10;AAQB01008633.1/164536-164458 7260:Drosophila
willistoni
Length = 79
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 5 ctacatctaccctgtagatccgaatttgttt 35
|||| ||||||||||||||||||||||||||
Sbjct: 1 ctacgtctaccctgtagatccgaatttgttt 31
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 50 gacaaattcggttctagagaggttt 74
|||||||||||||||||||||||||
Sbjct: 48 gacaaattcggttctagagaggttt 72
>RF00104;mir-10;AAPU01011054.1/176581-176658 7230:Drosophila
mojavensis
Length = 78
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 50 gacaaattcggttctagagaggtttgtgtgg 80
||||||||||||||||||||||||| |||||
Sbjct: 47 gacaaattcggttctagagaggtttatgtgg 77
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 tctaccctgtagatccgaatttgtt 34
|||||||||||||||||||||||||
Sbjct: 6 tctaccctgtagatccgaatttgtt 30
>RF00104;mir-10;AC165428.1/216964-216881 7668:Strongylocentrotus
purpuratus
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 tacatctaccctgtagatccgaatttgt 33
|||||| |||||||||||||||||||||
Sbjct: 2 tacatcaaccctgtagatccgaatttgt 29
>RF00104;mir-10;AC148590.12/25796-25721 7924:Amia calva (bowfin)
Length = 76
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 taccctgtagatccgaatttgtttgaa 38
|||||||||||||||||||||| ||||
Sbjct: 8 taccctgtagatccgaatttgtgtgaa 34
>RF00104;mir-10;AAGU02055274.1/837-762 9785:Loxodonta africana
(African savanna elephant)
Length = 76
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 taccctgtagatccgaatttgt 33
||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgt 29
>RF00104;mir-10;AADN02014571.1/896-822 9031:Gallus gallus
(chicken)
Length = 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 taccctgtagatccgaatttgt 33
||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgt 29
>RF00104;mir-10;AC145793.2/105735-105809 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 taccctgtagatccgaatttgt 33
||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgt 29
>RF00104;mir-10;AAVX01627291.1/678-603 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 taccctgtagatccgaatttgt 33
||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgt 29
>RF00104;mir-10;AC150390.2/218469-218395 7739:Branchiostoma
floridae (Florida lancelet)
Length = 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 taccctgtagatccgaatttgt 33
||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgt 29
