miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00667;mir-33;AAWU01038467.1/41288-41214 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 75
Score = 143 bits (72), Expect = 4e-34
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 1 gggtgcattgtagttgcattgcacgttttgcgttcgaaaagtccagtgcagtacttctgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 gggtgcattgtagttgcattgcacgttttgcgttcgaaaagtccagtgcagtacttctgc 63
Query: 61 aatgcaaaccag 72
||||||||||||
Sbjct: 64 aatgcaaaccag 75
>RF00667;mir-33;AAGE02018815.1/108790-108863 7159:Aedes aegypti
(yellow fever mosquito)
Length = 74
Score = 65.9 bits (33), Expect = 7e-11
Identities = 65/73 (89%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 1 gggtgcattgtagttgcattgcacgttttgcgttcgaaaagtccagtgcagtacttctgc 60
|||||||||||||||||||||||| |||||||||||| || | ||||| |||||||||
Sbjct: 4 gggtgcattgtagttgcattgcac-ttttgcgttcgataa-cacggtgcaatacttctgc 61
Query: 61 aatgcaaaccagg 73
||||||| |||||
Sbjct: 62 aatgcaagccagg 74
>RF00667;mir-33;AAIY01417522.1/685-752 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 68
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 gggtgcattgtagttgcattgcacgtt 27
|||||||||||||||||||||||||||
Sbjct: 4 gggtgcattgtagttgcattgcacgtt 30
>RF00667;mir-33;ABQO010273055.1/1298-1232 9315:Macropus eugenii
(tammar wallaby)
Length = 67
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 gggtgcattgtagttgcattgcacgt 26
||||||||||||||||||||||||||
Sbjct: 4 gggtgcattgtagttgcattgcacgt 29
>RF00667;mir-33;AAPN01437665.1/3526-3458 9258:Ornithorhynchus
anatinus (platypus)
Length = 69
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 3 gtgcattgtagttgcattgcacgtt 27
|||||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcacgtt 30
>RF00667;mir-33;CAAE01014738.1/1624047-1623979 99883:Tetraodon
nigroviridis
Length = 69
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 2 ggtgcattgtagttgcattgcacgt 26
|||||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgcacgt 29
>RF00667;mir-33;CAAB01001000.1/62134-62064 31033:Takifugu rubripes
Length = 71
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 2 ggtgcattgtagttgcattgcacgt 26
|||||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgcacgt 29
>RF00667;mir-33;AACT01006707.1/8663-8725 51511:Ciona savignyi
Length = 63
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gggtgcattgtagttgcattgcac 24
||||||||||||||||||||||||
Sbjct: 4 gggtgcattgtagttgcattgcac 27
>RF00667;mir-33;ABKP02018093.1/235-307 377271:Anopheles gambiae M
Length = 73
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gggtgcattgtagttgcattgcac 24
||||||||||||||||||||||||
Sbjct: 4 gggtgcattgtagttgcattgcac 27
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 46 gtgcagtacttctgcaatgcaa 67
||||||||||||||||||||||
Sbjct: 46 gtgcagtacttctgcaatgcaa 67
>RF00667;mir-33;ABRP01241176.1/6014-5945 132908:Pteropus vampyrus
(large flying fox)
Length = 70
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2 ggtgcattgtagttgcattgcacgttt 28
|||||||||||||||||||||| ||||
Sbjct: 5 ggtgcattgtagttgcattgcatgttt 31
>RF00667;mir-33;AAWZ01041754.1/18913-18979 28377:Anolis
carolinensis (green anole)
Length = 67
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gggtgcattgtagttgcattgca 23
|||||||||||||||||||||||
Sbjct: 4 gggtgcattgtagttgcattgca 26
>RF00667;mir-33;ABEP02003886.1/24922-24856 7739:Branchiostoma
floridae (Florida lancelet)
Length = 67
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gggtgcattgtagttgcattgca 23
|||||||||||||||||||||||
Sbjct: 4 gggtgcattgtagttgcattgca 26
>RF00667;mir-33;AABS01001128.1/11040-10976 7719:Ciona intestinalis
Length = 65
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 gtgcattgtagttgcattgcac 24
||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcac 27
>RF00667;mir-33;AC105358.8/20002-19934 10090:Mus musculus (house
mouse)
Length = 69
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 ggtgcattgtagttgcattgca 23
||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgca 26
>RF00667;mir-33;AAYZ01156209.1/2544-2612 9978:Ochotona princeps
(American pika)
Length = 69
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 ggtgcattgtagttgcattgca 23
||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgca 26
>RF00667;mir-33;AANH01004216.1/19959-19891 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 69
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 ggtgcattgtagttgcattgca 23
||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgca 26
>RF00667;mir-33;AANH01011106.1/1499-1563 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 65
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 ggtgcattgtagttgcattgca 23
||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgca 26
>RF00667;mir-33;AANH01004390.1/133329-133397 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 69
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 ggtgcattgtagttgcattgca 23
||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgca 26
>RF00667;mir-33;BAAE01000948.1/5094-5161 8090:Oryzias latipes
(Japanese medaka)
Length = 68
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 ggtgcattgtagttgcattgca 23
||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgca 26
>RF00667;mir-33;ABEP02003886.1/24513-24447 7739:Branchiostoma
floridae (Florida lancelet)
Length = 67
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 ggtgcattgtagttgcattgca 23
||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgca 26
>RF00667;mir-33;AADK01019309.1/4596-4529 7091:Bombyx mori
(domestic silkworm)
Length = 68
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 gtgcattgtagttgcattgcac 24
||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcac 27
>RF00667;mir-33;AAJJ01000068.1/107964-107901 7070:Tribolium
castaneum (red flour beetle)
Length = 64
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 ggtgcattgtagttgcattgca 23
||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgca 26
>RF00667;mir-33;AAPN01422427.1/10575-10641 9258:Ornithorhynchus
anatinus (platypus)
Length = 67
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 gtgcattgtagttgcattgca 23
|||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgca 26
>RF00667;mir-33;AAPY01023874.1/2160-2093 37347:Tupaia belangeri
(northern tree shrew)
Length = 68
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 gtgcattgtagttgcattgca 23
|||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgca 26
>RF00667;mir-33;AAWZ01021152.1/40382-40314 28377:Anolis
carolinensis (green anole)
Length = 69
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 gtgcattgtagttgcattgca 23
|||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgca 26
>RF00667;mir-33;AADN02006059.1/2390-2322 9031:Gallus gallus
(chicken)
Length = 69
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 gtgcattgtagttgcattgca 23
|||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgca 26
>RF00667;mir-33;BAAE01264275.1/1544-1477 8090:Oryzias latipes
(Japanese medaka)
Length = 68
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 gtgcattgtagttgcattgca 23
|||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgca 26
>RF00667;mir-33;AAZX01017121.1/8029-8095 7425:Nasonia vitripennis
(jewel wasp)
Length = 67
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 gtgcattgtagttgcattgca 23
|||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgca 26
>RF00667;mir-33;AADG05009493.1/1176-1111 7460:Apis mellifera
(honey bee)
Length = 66
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 gtgcattgtagttgcattgca 23
|||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgca 26
>RF00667;mir-33;ABJB011070400.1/4565-4636 6945:Ixodes scapularis
(black-legged tick)
Length = 72
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 2 ggtgcattgtagttgcattgcacgt 26
||||||||| |||||||||||||||
Sbjct: 5 ggtgcattgcagttgcattgcacgt 29
