miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00237;mir-9;AAPU01010522.1/88150-88211 7230:Drosophila
mojavensis
Length = 62
Score = 99.6 bits (50), Expect = 5e-21
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 8 tgctttggcgctttagctgtatgatagaatttaatatttcataaagctagattaccaaag 67
|||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||
Sbjct: 1 tgctttggcgctttagctgtatgatagatttaaatacttcataaagctagattaccaaag 60
Query: 68 ca 69
||
Sbjct: 61 ca 62
>RF00237;mir-9;BABH01038615.1/30-88 7091:Bombyx mori (domestic
silkworm)
Length = 59
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 45 ttcataaagctagattaccaaagca 69
|||||||||||||||||||||||||
Sbjct: 35 ttcataaagctagattaccaaagca 59
>RF00237;mir-9;AAZO01004036.1/9144-9086 121224:Pediculus humanus
corporis (human body louse)
Length = 59
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 46 tcataaagctagattaccaaagca 69
||||||||||||||||||||||||
Sbjct: 24 tcataaagctagattaccaaagca 1
>RF00237;mir-9;AADG05005335.1/11528-11468 7460:Apis mellifera
(honey bee)
Length = 61
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 tcataaagctagattaccaaagca 69
||||||||||||||||||||||||
Sbjct: 38 tcataaagctagattaccaaagca 61
>RF00237;mir-9;AAJJ01001943.1/9027-9086 7070:Tribolium castaneum
(red flour beetle)
Length = 60
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 tcataaagctagattaccaaagca 69
||||||||||||||||||||||||
Sbjct: 37 tcataaagctagattaccaaagca 60
>RF00237;mir-9;Z81467.1/13319-13384 6239:Caenorhabditis elegans
Length = 66
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 44 tttcataaagctagattaccaaagc 68
|||||||||||||| ||||||||||
Sbjct: 41 tttcataaagctaggttaccaaagc 65
>RF00237;mir-9;ABLE02000370.1/4844-4906 281687:Caenorhabditis
japonica
Length = 63
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 44 tttcataaagctagattaccaaagc 68
|||||||||||||| ||||||||||
Sbjct: 38 tttcataaagctaggttaccaaagc 62
