miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00464;mir-92;AAWU01030066.1/31253-31174 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 80
Score = 159 bits (80), Expect = 7e-39
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 5 atctacgcatcggtacggacaggggcaacattttgacatttgaagctaatattgcacttg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atctacgcatcggtacggacaggggcaacattttgacatttgaagctaatattgcacttg 60
Query: 65 tcccggcctatgcgtggagt 84
||||||||||||||||||||
Sbjct: 61 tcccggcctatgcgtggagt 80
>RF00464;mir-92;AAGE02006821.1/67754-67834 7159:Aedes aegypti
(yellow fever mosquito)
Length = 81
Score = 137 bits (69), Expect = 3e-32
Identities = 79/81 (97%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 5 atctacgcatcggtacggacaggggcaacattttgacatttg-aagctaatattgcactt 63
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 1 atctacgcatcggtacggacaggggcaacattgtgacatttgaaagctaatattgcactt 60
Query: 64 gtcccggcctatgcgtggagt 84
|||||||||||||||||||||
Sbjct: 61 gtcccggcctatgcgtggagt 81
>RF00464;mir-92;AAAB01007923.1/22644-22568 180454:Anopheles
gambiae str. PEST
Length = 77
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 50 ctaatattgcacttgtcccggcctatgcgtgg 81
||||||||||||||||||||||||||| ||||
Sbjct: 43 ctaatattgcacttgtcccggcctatgtgtgg 74
>RF00464;mir-92;AAZO01005488.1/5199-5120 121224:Pediculus humanus
corporis (human body louse)
Length = 80
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 51 taatattgcacttgtcccggcctat 75
|||||||||||||||||||||||||
Sbjct: 47 taatattgcacttgtcccggcctat 71
>RF00464;mir-92;AAVX01075480.1/600-523 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 52 aatattgcacttgtcccggcctat 75
||||||||||||||||||||||||
Sbjct: 46 aatattgcacttgtcccggcctat 69
>RF00464;mir-92;AAZX01003786.1/19988-19908 7425:Nasonia
vitripennis (jewel wasp)
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 52 aatattgcacttgtcccggcctat 75
||||||||||||||||||||||||
Sbjct: 52 aatattgcacttgtcccggcctat 75
>RF00464;mir-92;AADG05005316.1/2307-2226 7460:Apis mellifera
(honey bee)
Length = 82
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 52 aatattgcacttgtcccggcctat 75
||||||||||||||||||||||||
Sbjct: 53 aatattgcacttgtcccggcctat 76
>RF00464;mir-92;AAGJ02142502.1/22630-22713 7668:Strongylocentrotus
purpuratus
Length = 84
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 aatattgcacttgtcccggccta 74
|||||||||||||||||||||||
Sbjct: 52 aatattgcacttgtcccggccta 74
>RF00464;mir-92;ABRQ01318667.1/1002-921 9813:Procavia capensis
(cape rock hyrax)
Length = 82
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 tattgcacttgtcccggcctatg 76
|||||||||||||||||||||||
Sbjct: 52 tattgcacttgtcccggcctatg 74
>RF00464;mir-92;AAGJ02142502.1/20488-20574 7668:Strongylocentrotus
purpuratus
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 aatattgcacttgtcccggcct 73
||||||||||||||||||||||
Sbjct: 55 aatattgcacttgtcccggcct 76
>RF00464;mir-92;ABEP02031048.1/3570-3494 7739:Branchiostoma
floridae (Florida lancelet)
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 aatattgcacttgtcccggcct 73
||||||||||||||||||||||
Sbjct: 45 aatattgcacttgtcccggcct 66
>RF00464;mir-92;AASS01038642.1/1728-1802 7240:Drosophila simulans
Length = 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 attgcacttgtcccggcctatg 76
||||||||||||||||||||||
Sbjct: 46 attgcacttgtcccggcctatg 67
>RF00464;mir-92;AABU01002774.1/17891638-17891716 7227:Drosophila
melanogaster (fruit fly)
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 attgcacttgtcccggcctatg 76
||||||||||||||||||||||
Sbjct: 50 attgcacttgtcccggcctatg 71
>RF00464;mir-92;AAPU01011126.1/203266-203187 7230:Drosophila
mojavensis
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 attgcacttgtcccggcctatg 76
||||||||||||||||||||||
Sbjct: 51 attgcacttgtcccggcctatg 72
