miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00446;mir-133;AAWU01037751.1/37190-37294 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 105
Score = 208 bits (105), Expect = 1e-53
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 5 accgaacagtagctggttgacttcgggtcaaatcgacaaatatttgcaaagatatttcct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 accgaacagtagctggttgacttcgggtcaaatcgacaaatatttgcaaagatatttcct 60
Query: 65 ttgagaaatcatttggtccccttcaaccagctgtggacggttgat 109
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgagaaatcatttggtccccttcaaccagctgtggacggttgat 105
>RF00446;mir-133;AAGE02024522.1/50344-50238 7159:Aedes aegypti
(yellow fever mosquito)
Length = 107
Score = 137 bits (69), Expect = 3e-32
Identities = 81/85 (95%)
Strand = Plus / Plus
Query: 14 tagctggttgacttcgggtcaaatcgacaaatatttgcaaagatatttcctttgagaaat 73
|||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||
Sbjct: 9 tagctggttgacttcgggtcaaatcgtcaaatatttgcaaagatatttcctcagtgaaat 68
Query: 74 catttggtccccttcaaccagctgt 98
|||||||||||||||||||||||||
Sbjct: 69 catttggtccccttcaaccagctgt 93
>RF00446;mir-133;BABH01010529.1/47109-47021 7091:Bombyx mori
(domestic silkworm)
Length = 89
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 72 atcatttggtccccttcaaccagctgt 98
|||||||||||||||||||||||||||
Sbjct: 49 atcatttggtccccttcaaccagctgt 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 tagctggttgacttcgggtcaaat 37
||||||||||||||||||||||||
Sbjct: 13 tagctggttgacttcgggtcaaat 36
>RF00446;mir-133;ABJB010482881.1/10984-10878 6945:Ixodes scapularis
(black-legged tick)
Length = 107
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 74 catttggtccccttcaaccagctgtgg 100
|||||||||||||||||||||||||||
Sbjct: 69 catttggtccccttcaaccagctgtgg 95
>RF00446;mir-133;AAWZ01040028.1/1304-1218 28377:Anolis carolinensis
(green anole)
Length = 87
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 75 atttggtccccttcaaccagctgtgg 100
||||||||||||||||||||||||||
Sbjct: 50 atttggtccccttcaaccagctgtgg 75
>RF00446;mir-133;AAZO01007144.1/88847-88936 121224:Pediculus
humanus corporis (human body louse)
Length = 90
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 73 tcatttggtccccttcaaccagctgt 98
||||||||||||||||||||||||||
Sbjct: 51 tcatttggtccccttcaaccagctgt 76
>RF00446;mir-133;AAJJ01000046.1/77209-77292 7070:Tribolium castaneum
(red flour beetle)
Length = 84
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 75 atttggtccccttcaaccagctgtgg 100
||||||||||||||||||||||||||
Sbjct: 47 atttggtccccttcaaccagctgtgg 72
>RF00446;mir-133;ABLF01021874.1/5675-5746 7029:Acyrthosiphon pisum
(pea aphid)
Length = 72
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 74 catttggtccccttcaaccagctgt 98
|||||||||||||||||||||||||
Sbjct: 34 catttggtccccttcaaccagctgt 58
>RF00446;mir-133;AADG05005567.1/35761-35851 7460:Apis mellifera
(honey bee)
Length = 91
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 74 catttggtccccttcaaccagctgt 98
|||||||||||||||||||||||||
Sbjct: 53 catttggtccccttcaaccagctgt 77
>RF00446;mir-133;ABKQ02016003.1/5336-5232 377270:Anopheles gambiae
S
Length = 105
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 74 catttggtccccttcaaccagctgt 98
|||||||||||||||||||||||||
Sbjct: 67 catttggtccccttcaaccagctgt 91
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 14 tagctggttgacttcgggtcaaatcg 39
|||||||||||| |||||||||||||
Sbjct: 5 tagctggttgacatcgggtcaaatcg 30
>RF00446;mir-133;AAPP01015693.1/86515-86606 7217:Drosophila
ananassae
Length = 92
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 74 catttggtccccttcaaccagctgt 98
|||||||||||||||||||||||||
Sbjct: 54 catttggtccccttcaaccagctgt 78
>RF00446;mir-133;AAQB01006401.1/332784-332872 7260:Drosophila
willistoni
Length = 89
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 74 catttggtccccttcaaccagctgt 98
|||||||||||||||||||||||||
Sbjct: 51 catttggtccccttcaaccagctgt 75
>RF00446;mir-133;AASW01052175.1/117-202 7240:Drosophila simulans
Length = 86
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 74 catttggtccccttcaaccagctgt 98
|||||||||||||||||||||||||
Sbjct: 48 catttggtccccttcaaccagctgt 72
>RF00446;mir-133;AAQQ01431588.1/1752-1838 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 atttggtccccttcaaccagctgt 98
||||||||||||||||||||||||
Sbjct: 50 atttggtccccttcaaccagctgt 73
>RF00446;mir-133;AAIY01559715.1/853-939 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 atttggtccccttcaaccagctgt 98
||||||||||||||||||||||||
Sbjct: 50 atttggtccccttcaaccagctgt 73
>RF00446;mir-133;AAVX01020289.1/2798-2712 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 atttggtccccttcaaccagctgt 98
||||||||||||||||||||||||
Sbjct: 50 atttggtccccttcaaccagctgt 73
>RF00446;mir-133;AAVX01266048.1/613-699 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 atttggtccccttcaaccagctgt 98
||||||||||||||||||||||||
Sbjct: 50 atttggtccccttcaaccagctgt 73
>RF00446;mir-133;AAFS01007554.1/884-971 46245:Drosophila
pseudoobscura pseudoobscura
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 atttggtccccttcaaccagctgt 98
||||||||||||||||||||||||
Sbjct: 51 atttggtccccttcaaccagctgt 74
>RF00446;mir-133;AAPT01020977.1/40333-40419 7222:Drosophila
grimshawi
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 atttggtccccttcaaccagctgt 98
||||||||||||||||||||||||
Sbjct: 50 atttggtccccttcaaccagctgt 73
>RF00446;mir-133;AAPU01010689.1/170290-170375 7230:Drosophila
mojavensis
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 atttggtccccttcaaccagctgt 98
||||||||||||||||||||||||
Sbjct: 49 atttggtccccttcaaccagctgt 72
>RF00446;mir-133;AAQA01000068.1/106410-106501 6279:Brugia malayi
Length = 92
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 70 aaatcatttggtccccttcaaccagct 96
|||||| ||||||||||||||||||||
Sbjct: 50 aaatcaattggtccccttcaaccagct 76
>RF00446;mir-133;AADN02043827.1/38919-38834 9031:Gallus gallus
(chicken)
Length = 86
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 75 atttggtccccttcaaccagctg 97
|||||||||||||||||||||||
Sbjct: 49 atttggtccccttcaaccagctg 71
>RF00446;mir-133;AABS01000844.1/21320-21411 7719:Ciona
intestinalis
Length = 92
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 tttggtccccttcaaccagctg 97
||||||||||||||||||||||
Sbjct: 56 tttggtccccttcaaccagctg 77
