miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00672;mir-190;AAGE02010108.1/2181-2091 7159:Aedes aegypti
(yellow fever mosquito)
Length = 91
Score = 178 bits (90), Expect = 8e-45
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 gggtgattccggtgagatatgtttgatattcttggttgttaaattttatattatcaccca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggtgattccggtgagatatgtttgatattcttggttgttaaattttatattatcaccca 60
Query: 61 ggaatcaaacatattattactgtggtcatc 90
||||||||||||||||||||||||||||||
Sbjct: 61 ggaatcaaacatattattactgtggtcatc 90
>RF00672;mir-190;AAAB01008807.1/2608463-2608553 180454:Anopheles
gambiae str. PEST
Length = 91
Score = 109 bits (55), Expect = 6e-24
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 10 cggtgagatatgtttgatattcttggttgttaaattttatattatcacccaggaatcaaa 69
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 10 cggtgagatatgtttgatattcttggttgttaagatttcaattatcacccaggaatcaaa 69
Query: 70 catattattac 80
|||||||||||
Sbjct: 70 catattattac 80
>RF00672;mir-190;AAPU01011510.1/87170-87259 7230:Drosophila
mojavensis
Length = 90
Score = 95.6 bits (48), Expect = 9e-20
Identities = 73/80 (91%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 5 gattccggtgagatatgtttgatattcttggttgttaaattttatattatcacccaggaa 64
|||||| |||||||||||||||||||||||||||||| ||| | | | |||||||||||
Sbjct: 5 gattccagtgagatatgtttgatattcttggttgttacattcaaaagt-tcacccaggaa 63
Query: 65 tcaaacatattattactgtg 84
||||||||||||||||||||
Sbjct: 64 tcaaacatattattactgtg 83
>RF00672;mir-190;AAGH01005520.1/1141-1230 7240:Drosophila simulans
Length = 90
Score = 75.8 bits (38), Expect = 8e-14
Identities = 69/78 (88%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 7 ttccggtgagatatgtttgatattcttggttgttaaattttatattatcacccaggaatc 66
|||| |||||||||||||||||||||||||||| ||| | | | |||||||||||||
Sbjct: 7 ttccagtgagatatgtttgatattcttggttgtatcattcaaaagt-tcacccaggaatc 65
Query: 67 aaacatattattactgtg 84
||||||||||||||||||
Sbjct: 66 aaacatattattactgtg 83
>RF00672;mir-190;AADG05004972.1/16510-16597 7460:Apis mellifera
(honey bee)
Length = 88
Score = 63.9 bits (32), Expect = 3e-10
Identities = 64/74 (86%), Gaps = 3/74 (4%)
Strand = Plus / Plus
Query: 15 agatatgtttgatattcttggttgttaaattttatattatcacccaggaatcaaacatat 74
|||||||||||||||||||||||||| ||||| | ||| |||||||||||||||||
Sbjct: 15 agatatgtttgatattcttggttgtt---ttttaaagaatcgaccaggaatcaaacatat 71
Query: 75 tattactgtggtca 88
||||| |||||||
Sbjct: 72 tattatggtggtca 85
>RF00672;mir-190;ABLF01005497.1/9822-9738 7029:Acyrthosiphon pisum
(pea aphid)
Length = 85
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 12 gtgagatatgtttgatattcttggttgttaaattt 46
|||||||||||||||||||||||||||||| ||||
Sbjct: 12 gtgagatatgtttgatattcttggttgttatattt 46
>RF00672;mir-190;AAZO01006982.1/10545-10459 121224:Pediculus
humanus corporis (human body louse)
Length = 87
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 13 tgagatatgtttgatattcttggttgtt 40
||||||||||||||||||||||||||||
Sbjct: 13 tgagatatgtttgatattcttggttgtt 40
>RF00672;mir-190;AAJJ01000811.1/4671-4585 7070:Tribolium castaneum
(red flour beetle)
Length = 87
Score = 56.0 bits (28), Expect = 8e-08
Identities = 57/65 (87%), Gaps = 5/65 (7%)
Strand = Plus / Plus
Query: 15 agatatgtttgatattcttggttgttaaattttatattatcacccaggaatcaaacatat 74
||||||||||||||||||||||||| ||||| || |||||||||| ||||||||||
Sbjct: 15 agatatgtttgatattcttggttgt---atttttaat--tcacccaggagtcaaacatat 69
Query: 75 tatta 79
|||||
Sbjct: 70 tatta 74
>RF00672;mir-190;BABH01038078.1/4948-5036 7091:Bombyx mori
(domestic silkworm)
Length = 89
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 14 gagatatgtttgatattcttggttgtt 40
|||||||||||||||||||||||||||
Sbjct: 15 gagatatgtttgatattcttggttgtt 41
>RF00672;mir-190;ABJB010542931.1/4708-4623 6945:Ixodes scapularis
(black-legged tick)
Length = 86
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 14 gagatatgtttgatattcttggttgt 39
||||||||||||||||||||||||||
Sbjct: 15 gagatatgtttgatattcttggttgt 40
>RF00672;mir-190;AAZX01003157.1/32919-33003 7425:Nasonia
vitripennis (jewel wasp)
Length = 85
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 agatatgtttgatattcttggttgt 39
|||||||||||||||||||||||||
Sbjct: 15 agatatgtttgatattcttggttgt 39
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 58 ccaggaatcaaacatattattac 80
|||||||||||||||||||||||
Sbjct: 53 ccaggaatcaaacatattattac 75
