miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00679;mir-210;AAGE02019443.1/85298-85204 7159:Aedes aegypti
(yellow fever mosquito)
Length = 95
Score = 135 bits (68), Expect = 7e-32
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 ctcattgcagctgctgaccactgcacaagattagattatgactcttgtgcgtgtgacaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 ctcattgcagctgctgaccactgcacaagattagattatgactcttgtgcgtgtgacaac 66
Query: 61 ggctattg 68
||||||||
Sbjct: 67 ggctattg 74
>RF00679;mir-210;AAAB01008958.1/106879-106786 180454:Anopheles
gambiae str. PEST
Length = 94
Score = 107 bits (54), Expect = 2e-23
Identities = 63/66 (95%)
Strand = Plus / Plus
Query: 2 tcattgcagctgctgaccactgcacaagattagattatgactcttgtgcgtgtgacaacg 61
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 8 tcattgcagctgctgaccactgcacaagattagaatgcgactcttgtgcgtgtgacaacg 67
Query: 62 gctatt 67
||||||
Sbjct: 68 gctatt 73
>RF00679;mir-210;AANI01015309.1/4850-4756 7244:Drosophila virilis
Length = 95
Score = 83.8 bits (42), Expect = 2e-16
Identities = 61/66 (92%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 4 attgcagctgctgaccactgcacaagattaga-ttatgactcttgtgcgtgtgacaacgg 62
||||||||||||| |||||||||||||||||| | | ||||||||||||||||||| |||
Sbjct: 10 attgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgtgacagcgg 69
Query: 63 ctattg 68
||||||
Sbjct: 70 ctattg 75
>RF00679;mir-210;AADG05000839.1/5125-5031 7460:Apis mellifera
(honey bee)
Length = 95
Score = 75.8 bits (38), Expect = 6e-14
Identities = 57/62 (91%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 6 tgcagctgctgaccactgcacaagattaga-ttatgactcttgtgcgtgtgacaacggct 64
||||||||||| |||||||||||||||||| || ||||||||||||||||||| |||||
Sbjct: 12 tgcagctgctggccactgcacaagattagacataagactcttgtgcgtgtgacagcggct 71
Query: 65 at 66
||
Sbjct: 72 at 73
>RF00679;mir-210;AAPT01021333.1/33432-33528 7222:Drosophila
grimshawi
Length = 97
Score = 75.8 bits (38), Expect = 6e-14
Identities = 61/68 (89%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 4 attgcagctgctgaccactgcacaagattagatt---atgactcttgtgcgtgtgacaac 60
|||| |||||||| |||||||||||||||||||| | ||||||||||||||||||| |
Sbjct: 10 attggagctgctggccactgcacaagattagattcaaaagactcttgtgcgtgtgacagc 69
Query: 61 ggctattg 68
||||||||
Sbjct: 70 ggctattg 77
>RF00679;mir-210;BABH01000454.1/26338-26435 7091:Bombyx mori
(domestic silkworm)
Length = 98
Score = 54.0 bits (27), Expect = 2e-07
Identities = 58/67 (86%), Gaps = 6/67 (8%)
Strand = Plus / Plus
Query: 7 gcagctgctgaccactgcacaagatt-----agattatgactcttgtgcgtgtgacaacg 61
|||||||||| ||||||||||||||| || |||| |||||||||||||||||| ||
Sbjct: 13 gcagctgctggccactgcacaagattagtcaagtttat-actcttgtgcgtgtgacagcg 71
Query: 62 gctattg 68
|||||||
Sbjct: 72 gctattg 78
>RF00679;mir-210;AAJJ01000173.1/48564-48466 7070:Tribolium
castaneum (red flour beetle)
Length = 99
Score = 54.0 bits (27), Expect = 2e-07
Identities = 61/72 (84%), Gaps = 4/72 (5%)
Strand = Plus / Plus
Query: 1 ctcattgcagctgctgaccactgcacaagattagat----tatgactcttgtgcgtgtga 56
|||| ||||||||||| | |||||||||||||||| || ||||||||||||||||
Sbjct: 7 ctcactgcagctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtga 66
Query: 57 caacggctattg 68
|| |||||||||
Sbjct: 67 cagcggctattg 78
>RF00679;mir-210;AAZO01006118.1/235-143 121224:Pediculus humanus
corporis (human body louse)
Length = 93
Score = 46.1 bits (23), Expect = 5e-05
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 7 gcagctgctgaccactgcacaagattagattatgactcttgtgcgtg 53
|||||||||| ||| || ||||||||| ||| ||||||||||||||
Sbjct: 13 gcagctgctggacacagcccaagattagtttaagactcttgtgcgtg 59
>RF00679;mir-210;ABJB010428283.1/1369-1447 6945:Ixodes scapularis
(black-legged tick)
Length = 79
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 43 tcttgtgcgtgtgacaacggctattg 68
|||||||||||||||| |||||||||
Sbjct: 42 tcttgtgcgtgtgacagcggctattg 67
