miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00838;mir-252;AAGE02003685.1/79138-79037 7159:Aedes aegypti
(yellow fever mosquito)
Length = 102
Score = 141 bits (71), Expect = 1e-33
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 gaattctttactaagtactagtgccgcaggagagatttgaacccctgctgcccaagtgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 gaattctttactaagtactagtgccgcaggagagatttgaacccctgctgcccaagtgct 75
Query: 61 tatcgaagagt 71
|||||||||||
Sbjct: 76 tatcgaagagt 86
>RF00838;mir-252;ABKP02026277.1/40376-40477 377271:Anopheles
gambiae M
Length = 102
Score = 125 bits (63), Expect = 8e-29
Identities = 69/71 (97%)
Strand = Plus / Plus
Query: 1 gaattctttactaagtactagtgccgcaggagagatttgaacccctgctgcccaagtgct 60
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 16 gaattctttactaagtactagtgccgcaggagagattctaacccctgctgcccaagtgct 75
Query: 61 tatcgaagagt 71
|||||||||||
Sbjct: 76 tatcgaagagt 86
>RF00838;mir-252;AAJJ01000151.1/90694-90592 7070:Tribolium
castaneum (red flour beetle)
Length = 103
Score = 60.0 bits (30), Expect = 4e-09
Identities = 52/58 (89%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 8 ttactaagtactagtgccgcaggag-agatttgaacccctgctgcccaagtgcttatc 64
||||||||||||||||||||||||| | ||| || | |||||||| ||||||||||||
Sbjct: 23 ttactaagtactagtgccgcaggagtacattcgacctcctgctgctcaagtgcttatc 80
>RF00838;mir-252;AAQB01009407.1/423501-423388 7260:Drosophila
willistoni
Length = 114
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 6 ctttactaagtactagtgccgcaggag 32
|||||||||||||||||||||||||||
Sbjct: 21 ctttactaagtactagtgccgcaggag 47
>RF00838;mir-252;AAPP01019511.1/70614-70503 7217:Drosophila
ananassae
Length = 112
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 ctttactaagtactagtgccgcaggag 32
|||| ||||||||||||||||||||||
Sbjct: 20 ctttcctaagtactagtgccgcaggag 46
>RF00838;mir-252;AABU01002774.1/5715658-5715545 7227:Drosophila
melanogaster (fruit fly)
Length = 114
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 ctttactaagtactagtgccgcaggag 32
|||| ||||||||||||||||||||||
Sbjct: 21 ctttcctaagtactagtgccgcaggag 47
>RF00838;mir-252;AAFS01000005.1/103510-103621 46245:Drosophila
pseudoobscura pseudoobscura
Length = 112
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 ctttactaagtactagtgccgcaggag 32
|||| ||||||||||||||||||||||
Sbjct: 21 ctttcctaagtactagtgccgcaggag 47
>RF00838;mir-252;AAPT01019325.1/16150-16037 7222:Drosophila
grimshawi
Length = 114
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 ctttactaagtactagtgccgcaggag 32
|||| ||||||||||||||||||||||
Sbjct: 21 ctttcctaagtactagtgccgcaggag 47
>RF00838;mir-252;AAPU01011022.1/144995-144882 7230:Drosophila
mojavensis
Length = 114
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 ctttactaagtactagtgccgcaggag 32
|||| ||||||||||||||||||||||
Sbjct: 21 ctttcctaagtactagtgccgcaggag 47
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 44 cctgctgcccaagtgcttatc 64
|||||||||||||||||||||
Sbjct: 71 cctgctgcccaagtgcttatc 91
>RF00838;mir-252;AANI01014608.1/9402-9515 7244:Drosophila virilis
Length = 114
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 ctttactaagtactagtgccgcaggag 32
|||| ||||||||||||||||||||||
Sbjct: 21 ctttcctaagtactagtgccgcaggag 47
>RF00838;mir-252;AAZO01005296.1/52222-52118 121224:Pediculus
humanus corporis (human body louse)
Length = 105
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 ctaagtactagtgccgcaggag 32
||||||||||||||||||||||
Sbjct: 26 ctaagtactagtgccgcaggag 47
>RF00838;mir-252;BABH01035687.1/2460-2355 7091:Bombyx mori
(domestic silkworm)
Length = 106
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 ctaagtactagtgccgcaggag 32
||||||||||||||||||||||
Sbjct: 26 ctaagtactagtgccgcaggag 47
>RF00838;mir-252;AAZX01009285.1/3883-4013 7425:Nasonia vitripennis
(jewel wasp)
Length = 131
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 ctaagtactagtgccgcaggag 32
||||||||||||||||||||||
Sbjct: 28 ctaagtactagtgccgcaggag 49
>RF00838;mir-252;AADG05011415.1/92-6 7460:Apis mellifera (honey
bee)
Length = 87
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 taagtactagtgccgcaggag 32
|||||||||||||||||||||
Sbjct: 9 taagtactagtgccgcaggag 29
