miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00637;mir-276;AAGE02007617.1/38970-39063 7159:Aedes aegypti
(yellow fever mosquito)
Length = 94
Score = 147 bits (74), Expect = 3e-35
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 9 tggtgattgccatcagcgaggtatagagttcctacgttgcgagttcgaaatcggtaggaa 68
||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||
Sbjct: 3 tggtgattgccatcagcgaggtatagagttcctacgttgcgtgtgcgaaattggtaggaa 62
Query: 69 cttcataccgtgctcttggctagccg 94
||||||||||||||||||||||||||
Sbjct: 63 cttcataccgtgctcttggctagccg 88
>RF00637;mir-276;ABKQ02021477.1/23012-22918 377270:Anopheles
gambiae S
Length = 95
Score = 67.9 bits (34), Expect = 2e-11
Identities = 74/86 (86%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 10 ggtgattgccatcagcgaggtatagagttcctacgttgcgagttcgaaa-tcggtaggaa 68
||||| ||||||||||||||||||||||||||||| | | | |||| | |||||||
Sbjct: 4 ggtgactgccatcagcgaggtatagagttcctacggtaatcgattgaaactttgtaggaa 63
Query: 69 cttcataccgtgctcttggctagccg 94
||||||||||||||||||| ||||||
Sbjct: 64 cttcataccgtgctcttggatagccg 89
>RF00637;mir-276;AANI01017424.1/110847-110939 7244:Drosophila
virilis
Length = 93
Score = 65.9 bits (33), Expect = 1e-10
Identities = 64/73 (87%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 15 ttgccatcagcgaggtatagagttcctacgttgcgagttcgaaatcggtaggaacttcat 74
|||||||||||||||||||||||||||||||| | | || | | |||||||||||||
Sbjct: 9 ttgccatcagcgaggtatagagttcctacgtt-caatttatatactcgtaggaacttcat 67
Query: 75 accgtgctcttgg 87
|||||||||||||
Sbjct: 68 accgtgctcttgg 80
>RF00637;mir-276;AADE01001409.1/12453-12359 46245:Drosophila
pseudoobscura pseudoobscura
Length = 95
Score = 60.0 bits (30), Expect = 6e-09
Identities = 61/70 (87%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 18 ccatcagcgaggtatagagttcctacgttgcgagttcgaaatcggtaggaacttcatacc 77
|||||||||||||||||||||||||||| || | | || || |||||||||| |||||
Sbjct: 14 ccatcagcgaggtatagagttcctacgtgccgtatccaaagtc-gtaggaacttaatacc 72
Query: 78 gtgctcttgg 87
||||||||||
Sbjct: 73 gtgctcttgg 82
>RF00637;mir-276;AE014296.4/10312890-10312983 7227:Drosophila
melanogaster (fruit fly)
Length = 94
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 18 ccatcagcgaggtatagagttcctacgtt 46
|||||||||||||||||||||||||||||
Sbjct: 14 ccatcagcgaggtatagagttcctacgtt 42
>RF00637;mir-276;AAPU01011641.1/29322-29227 7230:Drosophila
mojavensis
Length = 96
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 18 ccatcagcgaggtatagagttcctacgt 45
||||||||||||||||||||||||||||
Sbjct: 14 ccatcagcgaggtatagagttcctacgt 41
>RF00637;mir-276;AAZO01003220.1/6657-6747 121224:Pediculus humanus
corporis (human body louse)
Length = 91
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 62 gtaggaacttcataccgtgctcttgg 87
||||||||||||||||||||||||||
Sbjct: 52 gtaggaacttcataccgtgctcttgg 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 cagcgaggtatagagttcctacgt 45
||||||||||||||||||||||||
Sbjct: 16 cagcgaggtatagagttcctacgt 39
>RF00637;mir-276;ABLF01003513.1/4658-4754 7029:Acyrthosiphon pisum
(pea aphid)
Length = 97
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 62 gtaggaacttcataccgtgctcttgg 87
||||||||||||||||||||||||||
Sbjct: 59 gtaggaacttcataccgtgctcttgg 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 23 agcgaggtatagagttcctacgtt 46
||||||||||||||||||||||||
Sbjct: 16 agcgaggtatagagttcctacgtt 39
>RF00637;mir-276;AADK01021256.1/890-979 7091:Bombyx mori (domestic
silkworm)
Length = 90
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 62 gtaggaacttcataccgtgctcttgg 87
||||||||||||||||||||||||||
Sbjct: 51 gtaggaacttcataccgtgctcttgg 76
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 agcgaggtatagagttcctacgt 45
|||||||||||||||||||||||
Sbjct: 17 agcgaggtatagagttcctacgt 39
>RF00637;mir-276;AAZX01001999.1/5300-5391 7425:Nasonia vitripennis
(jewel wasp)
Length = 92
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 62 gtaggaacttcataccgtgctcttgg 87
||||||||||||||||||||||||||
Sbjct: 53 gtaggaacttcataccgtgctcttgg 78
>RF00637;mir-276;AADG05002822.1/76702-76793 7460:Apis mellifera
(honey bee)
Length = 92
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 62 gtaggaacttcataccgtgctcttgg 87
||||||||||||||||||||||||||
Sbjct: 53 gtaggaacttcataccgtgctcttgg 78
>RF00637;mir-276;AAJJ01000143.1/58311-58223 7070:Tribolium
castaneum (red flour beetle)
Length = 89
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 62 gtaggaacttcataccgtgctcttgg 87
||||||||||||||||||||||||||
Sbjct: 50 gtaggaacttcataccgtgctcttgg 75
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 agcgaggtatagagttcctacgt 45
|||||||||||||||||||||||
Sbjct: 15 agcgaggtatagagttcctacgt 37
>RF00637;mir-276;AAWU01010561.1/6178-6274 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 97
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 63 taggaacttcataccgtgctcttgg 87
|||||||||||||||||||||||||
Sbjct: 60 taggaacttcataccgtgctcttgg 84
>RF00637;mir-276;AAGE02000417.1/11129-11035 7159:Aedes aegypti
(yellow fever mosquito)
Length = 95
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 63 taggaacttcataccgtgctcttgg 87
|||||||||||||||||||||||||
Sbjct: 58 taggaacttcataccgtgctcttgg 82
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tcagcgaggtatagagttccta 42
||||||||||||||||||||||
Sbjct: 14 tcagcgaggtatagagttccta 35
>RF00637;mir-276;ABKP02026752.1/53325-53226 377271:Anopheles
gambiae M
Length = 100
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 63 taggaacttcataccgtgctcttgg 87
|||||||||||||||||||||||||
Sbjct: 63 taggaacttcataccgtgctcttgg 87
>RF00637;mir-276;ABKQ02021479.1/6963-6864 377270:Anopheles gambiae
S
Length = 100
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 63 taggaacttcataccgtgctcttgg 87
|||||||||||||||||||||||||
Sbjct: 63 taggaacttcataccgtgctcttgg 87
