miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00729;mir-278;AAWU01001740.1/43930-44034 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 105
Score = 202 bits (102), Expect = 6e-52
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 4 ttctggtcttggtgcggacggacgatagtcttcagcgaccgtgccatttgaaaacccttt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttctggtcttggtgcggacggacgatagtcttcagcgaccgtgccatttgaaaacccttt 60
Query: 64 gggtcggtgggactttcgtccgtttgtaaccgccagttgcaa 105
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gggtcggtgggactttcgtccgtttgtaaccgccagttgcaa 102
>RF00729;mir-278;AAGE02001172.1/33036-33136 7159:Aedes aegypti
(yellow fever mosquito)
Length = 101
Score = 69.9 bits (35), Expect = 6e-12
Identities = 74/85 (87%), Gaps = 4/85 (4%)
Strand = Plus / Plus
Query: 13 tggtgcggacggacgatagtcttcagcgaccgtgccatttgaaaaccctttgggtcggtg 72
||||||| |||||||||||||||||||| |||||| |||||| | | ||||||||
Sbjct: 10 tggtgcgaacggacgatagtcttcagcggccgtgc-atttgatagaatt---ggtcggtg 65
Query: 73 ggactttcgtccgtttgtaaccgcc 97
|||||||||||||||||||||||||
Sbjct: 66 ggactttcgtccgtttgtaaccgcc 90
>RF00729;mir-278;AAPP01018781.1/36806-36709 7217:Drosophila
ananassae
Length = 98
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 64 gggtcggtgggactttcgtccgtttgtaac 93
||||||||||||||||||||||||||||||
Sbjct: 54 gggtcggtgggactttcgtccgtttgtaac 83
>RF00729;mir-278;AANI01014820.1/6361-6262 7244:Drosophila virilis
Length = 100
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 65 ggtcggtgggactttcgtccgtttgtaac 93
|||||||||||||||||||||||||||||
Sbjct: 57 ggtcggtgggactttcgtccgtttgtaac 85
>RF00729;mir-278;ABKP02019144.1/2398-2299 377271:Anopheles gambiae
M
Length = 100
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 65 ggtcggtgggactttcgtccgtttgtaa 92
||||||||||||||||||||||||||||
Sbjct: 57 ggtcggtgggactttcgtccgtttgtaa 84
>RF00729;mir-278;AADG05005760.1/28066-27969 7460:Apis mellifera
(honey bee)
Length = 98
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 65 ggtcggtgggactttcgtccgtttg 89
|||||||||||||||||||||||||
Sbjct: 55 ggtcggtgggactttcgtccgtttg 79
>RF00729;mir-278;AAZO01005350.1/16349-16259 121224:Pediculus
humanus corporis (human body louse)
Length = 91
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 tcggtgggactttcgtccgttt 88
||||||||||||||||||||||
Sbjct: 52 tcggtgggactttcgtccgttt 73
