miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00948;mir-996;AAWU01001985.1/4335-4234 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 102
Score = 184 bits (93), Expect = 1e-46
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 1 aactcaattttcgtcggcgtgcatgtatctggtgcacggttttcagttgcaatatagctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 aactcaattttcgtcggcgtgcatgtatctggtgcacggttttcagttgcaatatagctt 63
Query: 61 cgtgactagattacatgctcgtctatgaagttg 93
|||||||||||||||||||||||||||||||||
Sbjct: 64 cgtgactagattacatgctcgtctatgaagttg 96
>RF00948;mir-996;AAGE02017556.1/112272-112170 7159:Aedes aegypti
(yellow fever mosquito)
Length = 103
Score = 147 bits (74), Expect = 3e-35
Identities = 90/94 (95%), Gaps = 1/94 (1%)
Strand = Plus / Plus
Query: 1 aactcaattttcgtcggcgtgcatgtatctggtgcacggttttc-agttgcaatatagct 59
||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||| |||
Sbjct: 4 aactcaattttcgtcggcgtgcatgaatctggtgcacggttttccagttgtaatatcgct 63
Query: 60 tcgtgactagattacatgctcgtctatgaagttg 93
||||||||||||||||||||||||||||||||||
Sbjct: 64 tcgtgactagattacatgctcgtctatgaagttg 97
>RF00948;mir-996;AAAB01008898.1/1736227-1736132 180454:Anopheles
gambiae str. PEST
Length = 96
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 59 ttcgtgactagattacatgctcgtctat 86
||||||||||||||||||||||||||||
Sbjct: 56 ttcgtgactagattacatgctcgtctat 83
>RF00948;mir-996;AANI01014375.1/48816-48912 7244:Drosophila
virilis
Length = 97
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 59 ttcgtgactagattacatgctcgtctatgaagttg 93
|||||||||||||| ||||||||||||| ||||||
Sbjct: 57 ttcgtgactagatttcatgctcgtctattaagttg 91
