miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01943;mir-999;AAWU01001445.1/28151-28270 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 120
Score = 180 bits (91), Expect = 2e-45
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 1 ccggtcacccgcagggacgcggtctggcaggaaataatttggcattagattcaaatgtta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 ccggtcacccgcagggacgcggtctggcaggaaataatttggcattagattcaaatgtta 75
Query: 61 actgtaagactgtgtctttgagggcgatcct 91
|||||||||||||||||||||||||||||||
Sbjct: 76 actgtaagactgtgtctttgagggcgatcct 106
>RF01943;mir-999;AAGE02006027.1/163141-163260 7159:Aedes aegypti
(yellow fever mosquito)
Length = 120
Score = 117 bits (59), Expect = 3e-26
Identities = 74/79 (93%)
Strand = Plus / Plus
Query: 11 gcagggacgcggtctggcaggaaataatttggcattagattcaaatgttaactgtaagac 70
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 26 gcagggacgcggtcgtgcaggaaattatttggcattagattcaaatgttaactgtaagac 85
Query: 71 tgtgtctttgagggcgatc 89
|||||||||| ||| ||||
Sbjct: 86 tgtgtctttgcgggtgatc 104
>RF01943;mir-999;ABKQ02022076.1/15069-14951 377270:Anopheles
gambiae S
Length = 119
Score = 81.8 bits (41), Expect = 1e-15
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 37 atttggcattagattcaaatgttaactgtaagactgtgtctttga 81
|||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 52 atttggcattcgattcaaatgttaactgtaagactgtgtctttga 96
>RF01943;mir-999;AAPT01019304.1/332529-332410 7222:Drosophila
grimshawi
Length = 120
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 aatgttaactgtaagactgtgtctt 78
|||||||||||||||||||||||||
Sbjct: 67 aatgttaactgtaagactgtgtctt 91
>RF01943;mir-999;AASS01029274.1/1756-1642 7240:Drosophila simulans
Length = 115
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 aatgttaactgtaagactgtgtct 77
||||||||||||||||||||||||
Sbjct: 63 aatgttaactgtaagactgtgtct 86
>RF01943;mir-999;AAFS01003957.1/6353-6235 46245:Drosophila
pseudoobscura pseudoobscura
Length = 119
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 aatgttaactgtaagactgtgtct 77
||||||||||||||||||||||||
Sbjct: 67 aatgttaactgtaagactgtgtct 90
>RF01943;mir-999;AAPP01019541.1/123679-123560 7217:Drosophila
ananassae
Length = 120
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 aatgttaactgtaagactgtgtct 77
||||||||||||||||||||||||
Sbjct: 68 aatgttaactgtaagactgtgtct 91
>RF01943;mir-999;AAQB01009428.1/36409-36290 7260:Drosophila
willistoni
Length = 120
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 aatgttaactgtaagactgtgtct 77
||||||||||||||||||||||||
Sbjct: 67 aatgttaactgtaagactgtgtct 90
>RF01943;mir-999;AABU01002774.1/14048066-14047946 7227:Drosophila
melanogaster (fruit fly)
Length = 121
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 aatgttaactgtaagactgtgtct 77
||||||||||||||||||||||||
Sbjct: 68 aatgttaactgtaagactgtgtct 91
>RF01943;mir-999;AAPU01011060.1/218967-218849 7230:Drosophila
mojavensis
Length = 119
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 aatgttaactgtaagactgtgtct 77
||||||||||||||||||||||||
Sbjct: 67 aatgttaactgtaagactgtgtct 90
