miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;ABXC01002915.1/67233-67385 4558:Sorghum bicolor
(sorghum)
Length = 153
Score = 65.9 bits (33), Expect = 2e-10
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 54 ctagatacgctgctttaactatgtatctggacaccgtgtatatctaagtacatagcaaaa 113
|||||||| |||||| |||||| || | |||| |||||||||||||| ||||||||||
Sbjct: 44 ctagatacattgcttttactatgcatttagacatagtgtatatctaagtgcatagcaaaa 103
Query: 114 actatgtacctagaaaa 130
|||||||| ||| ||||
Sbjct: 104 actatgtatctaaaaaa 120
>RF00906;MIR1122;ABXC01002481.1/9459-9348 4558:Sorghum bicolor
(sorghum)
Length = 112
Score = 61.9 bits (31), Expect = 3e-09
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 90 tgtatatctaagtacatagcaaaaactatgtacctagaaaagccaaaacatctta 144
|||| |||||||| ||||| |||| | ||||| ||||||||||||||||||||||
Sbjct: 80 tgtacatctaagtgcatagtaaaagcaatgtatctagaaaagccaaaacatctta 26
>RF00906;MIR1122;ABXC01000088.1/175772-175619 4558:Sorghum bicolor
(sorghum)
Length = 154
Score = 60.0 bits (30), Expect = 1e-08
Identities = 69/82 (84%), Gaps = 5/82 (6%)
Strand = Plus / Plus
Query: 65 gctttaactatgtatctggacaccgtgtatatctaagtacatagcaaaaactatgtacct 124
||||||||||||||||| || ||||||||||||| | |||||||| ||||||| ||
Sbjct: 55 gctttaactatgtatctaga-----tgtatatctaagtgcgtagcaaaagctatgtatct 109
Query: 125 agaaaagccaaaacatcttata 146
|| |||||||||| |||||||
Sbjct: 110 agtaaagccaaaatgtcttata 131
Score = 48.1 bits (24), Expect = 4e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 117 atgtacctagaaaagccaaaacatcttatattttagaatg 156
||||| |||||||||||||||| ||||||| ||| |||||
Sbjct: 53 atgtatctagaaaagccaaaacgtcttataatttggaatg 14
>RF00906;MIR1122;ABXC01004672.1/95113-95007 4558:Sorghum bicolor
(sorghum)
Length = 107
Score = 60.0 bits (30), Expect = 1e-08
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 72 ctatgtatctggacaccgtgtatatctaagtacatagcaaaaactatgtacctagaaaag 131
|||||||||| |||| | ||||||||| || | |||||||| |||||||||||| ||||
Sbjct: 35 ctatgtatctagacatagcgtatatctaggtgcttagcaaaagctatgtacctaggaaag 94
Query: 132 ccaaaa 137
||||||
Sbjct: 95 ccaaaa 100
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 115 ctatgtacctagaaaagccaaaac 138
||||||||||||||||||||||||
Sbjct: 30 ctatgtacctagaaaagccaaaac 7
>RF00906;MIR1122;ABXC01000872.1/103457-103600 4558:Sorghum bicolor
(sorghum)
Length = 144
Score = 56.0 bits (28), Expect = 2e-07
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 99 aagtacatagcaaaaactatgtacctagaaaagccaaaacatcttatattttagaatgag 158
|||| |||| ||||| ||| ||| |||||||||||||||| ||||||| ||| ||||| |
Sbjct: 71 aagtgcataccaaaagctacgtatctagaaaagccaaaacgtcttataatttggaatggg 12
Query: 159 ggga 162
||||
Sbjct: 11 ggga 8
>RF00906;MIR1122;ABXC01001510.1/32715-32871 4558:Sorghum bicolor
(sorghum)
Length = 157
Score = 54.0 bits (27), Expect = 7e-07
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 71 actatgtatctggacaccgtgtatatctaagtacatagcaaaa 113
||||||||||| ||||| ||| |||||||||| ||||||||||
Sbjct: 98 actatgtatctagacacagtgcatatctaagtgcatagcaaaa 56
>RF00906;MIR1122;ABXC01006511.1/264469-264340 4558:Sorghum bicolor
(sorghum)
Length = 130
Score = 54.0 bits (27), Expect = 7e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 112 aaactatgtacctagaaaagccaaaacatcttatattttagaa 154
|||||||||| ||||||||||||||| ||||||| |||||||
Sbjct: 73 aaactatgtatctagaaaagccaaaatgtcttataatttagaa 115
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 117 atgtacctagaaaagccaaaacatcttata 146
||||| |||||||||||||| |||||||||
Sbjct: 60 atgtatctagaaaagccaaagcatcttata 31
>RF00906;MIR1122;ABXC01001887.1/109652-109767 4558:Sorghum bicolor
(sorghum)
Length = 116
Score = 52.0 bits (26), Expect = 3e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 104 catagcaaaaactatgtacctagaaaagccaaaa 137
|||||||||| ||||||||||||| |||||||||
Sbjct: 51 catagcaaaagctatgtacctagagaagccaaaa 84
Score = 46.1 bits (23), Expect = 2e-04
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 115 ctatgtacctagaaaagccaaaacatcttatattttagaatgaggggagta 165
||||| ||||||||||||||||||| |||| | ||| ||||| |||||||
Sbjct: 55 ctatgcacctagaaaagccaaaacaacttacaatttggaatggagggagta 5
>RF00906;MIR1122;ABXC01000992.1/406365-406501 4558:Sorghum bicolor
(sorghum)
Length = 137
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 12 ctactccctcagttccaaattataa 36
|||||||||||||||||||||||||
Sbjct: 134 ctactccctcagttccaaattataa 110
>RF00906;MIR1122;ABXC01004969.1/59800-59956 4558:Sorghum bicolor
(sorghum)
Length = 157
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 12 ctactccctcagttccaaattataa 36
|||||||||||||||||||||||||
Sbjct: 154 ctactccctcagttccaaattataa 130
>RF00906;MIR1122;ABXC01001527.1/885-965 4558:Sorghum bicolor
(sorghum)
Length = 81
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 gctactccctcagttccaaattataa 36
||||||||||| ||||||||||||||
Sbjct: 3 gctactccctccgttccaaattataa 28
>RF00906;MIR1122;ABXC01002968.1/30248-30403 4558:Sorghum bicolor
(sorghum)
Length = 156
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 gctactccctcagttccaaattataa 36
||||||||||| ||||||||||||||
Sbjct: 3 gctactccctccgttccaaattataa 28
>RF00906;MIR1122;ABXC01002870.1/113864-113706 4558:Sorghum bicolor
(sorghum)
Length = 159
Score = 44.1 bits (22), Expect = 6e-04
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 89 gtgtatatctaagtacatagcaaaaactatgtacctagaaaagccaaaacatcttata 146
|||||||||||||| |||| ||| | ||| | |||||||||||||||| |||||||
Sbjct: 81 gtgtatatctaagtgcataaagaaagccatgaatctagaaaagccaaaacgtcttata 24
>RF00906;MIR1122;ABXC01000332.1/159241-159126 4558:Sorghum bicolor
(sorghum)
Length = 116
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 123 ctagaaaagccaaaacatcttatattttagaatg 156
||||||||||||||| ||||||||||| |||||
Sbjct: 47 ctagaaaagccaaaatgtcttatattttggaatg 14
>RF00906;MIR1122;ABXC01006238.1/21919-22080 4558:Sorghum bicolor
(sorghum)
Length = 162
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 117 atgtacctagaaaagccaaaacatcttata 146
||||| |||||||||||||||| |||||||
Sbjct: 53 atgtatctagaaaagccaaaacgtcttata 24
>RF00906;MIR1122;ABXC01000646.1/88636-88479 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 11 gctactccctcagttccaaattataa 36
||||||||||| ||||||||||||||
Sbjct: 156 gctactccctccgttccaaattataa 131
