miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;AAPP01015675.1/360249-360318 7217:Drosophila
          ananassae
          Length = 70

 Score =  139 bits (70), Expect = 6e-33
 Identities = 70/70 (100%)
 Strand = Plus / Plus

                                                                      
Query: 5  gcaaattgaggtagtaggttgtatagtagcaactaagaatcgtactatacaatgtgctag 64
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gcaaattgaggtagtaggttgtatagtagcaactaagaatcgtactatacaatgtgctag 60

                    
Query: 65 ctttctttgc 74
          ||||||||||
Sbjct: 61 ctttctttgc 70




>RF00027;let-7;AAIZ01016032.1/2164-2232 7234:Drosophila persimilis
          Length = 69

 Score = 91.7 bits (46), Expect = 1e-18
 Identities = 65/70 (92%), Gaps = 1/70 (1%)
 Strand = Plus / Plus

                                                                      
Query: 5  gcaaattgaggtagtaggttgtatagtagcaactaagaatcgtactatacaatgtgctag 64
          ||||||||||||||||||||||||||||| |  | ||| |||||||||||||||||||||
Sbjct: 1  gcaaattgaggtagtaggttgtatagtagtacttcaga-tcgtactatacaatgtgctag 59

                    
Query: 65 ctttctttgc 74
          ||||||||||
Sbjct: 60 ctttctttgc 69




>RF00027;let-7;AAQB01006449.1/358437-358507 7260:Drosophila
          willistoni
          Length = 71

 Score = 85.7 bits (43), Expect = 7e-17
 Identities = 65/71 (91%), Gaps = 1/71 (1%)
 Strand = Plus / Plus

                                                                      
Query: 5  gcaaattgaggtagtaggttgtatagtagcaacta-agaatcgtactatacaatgtgcta 63
          ||||||||||||||||||||||||||||| || ||   |||| |||||||||||||||||
Sbjct: 1  gcaaattgaggtagtaggttgtatagtagtaattattcaatcatactatacaatgtgcta 60

                     
Query: 64 gctttctttgc 74
          |||||||||||
Sbjct: 61 gctttctttgc 71




>RF00027;let-7;AAPT01004257.1/151-220 7222:Drosophila grimshawi
          Length = 70

 Score = 60.0 bits (30), Expect = 4e-09
 Identities = 60/70 (85%)
 Strand = Plus / Plus

                                                                      
Query: 5  gcaaattgaggtagtaggttgtatagtagcaactaagaatcgtactatacaatgtgctag 64
          ||||||||||||||||||||||||||||| | |||   | | |||||||||   ||||||
Sbjct: 1  gcaaattgaggtagtaggttgtatagtagtatctatctagcatactatacagcttgctag 60

                    
Query: 65 ctttctttgc 74
          ||||||||||
Sbjct: 61 ctttctttgc 70




>RF00027;let-7;AANI01016295.1/2335-2404 7244:Drosophila virilis
          Length = 70

 Score = 60.0 bits (30), Expect = 4e-09
 Identities = 60/70 (85%)
 Strand = Plus / Plus

                                                                      
Query: 5  gcaaattgaggtagtaggttgtatagtagcaactaagaatcgtactatacaatgtgctag 64
          ||||||||||||||||||||||||||||| |  ||   | | |||||||||  |||||||
Sbjct: 1  gcaaattgaggtagtaggttgtatagtagtatttatagagcatactatacagcgtgctag 60

                    
Query: 65 ctttctttgc 74
          ||||||||||
Sbjct: 61 ctttctttgc 70




>RF00027;let-7;AAPU01010514.1/89793-89724 7230:Drosophila
          mojavensis
          Length = 70

 Score = 60.0 bits (30), Expect = 4e-09
 Identities = 60/70 (85%)
 Strand = Plus / Plus

                                                                      
Query: 5  gcaaattgaggtagtaggttgtatagtagcaactaagaatcgtactatacaatgtgctag 64
          ||||||||||||||||||||||||||||| |  ||   | | |||||||||  |||||||
Sbjct: 1  gcaaattgaggtagtaggttgtatagtagtacttatagaccatactatacagcgtgctag 60

                    
Query: 65 ctttctttgc 74
          ||||||||||
Sbjct: 61 ctttctttgc 70




>RF00027;let-7;BABH01009736.1/23777-23700 7091:Bombyx mori
          (domestic silkworm)
          Length = 78

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 10 ttgaggtagtaggttgtatagta 32
          |||||||||||||||||||||||
Sbjct: 6  ttgaggtagtaggttgtatagta 28




>RF00027;let-7;AADG05003176.1/75207-75290 7460:Apis mellifera
          (honey bee)
          Length = 84

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 11 tgaggtagtaggttgtatagtag 33
          |||||||||||||||||||||||
Sbjct: 7  tgaggtagtaggttgtatagtag 29




>RF00027;let-7;AASS01032016.1/98-33 7240:Drosophila simulans
          Length = 66

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 59/67 (88%), Gaps = 3/67 (4%)
 Strand = Plus / Plus

                                                                      
Query: 5  gcaaattgaggtagtaggttgtatagtagcaactaagaatcgtactatacaatgtgctag 64
          |||||||||||||||| |||||||||||| || ||   ||| |||||||| |||||||||
Sbjct: 1  gcaaattgaggtagta-gttgtatagtagtaa-tacacatcatactatac-atgtgctag 57

                 
Query: 65 ctttctt 71
          |||||||
Sbjct: 58 ctttctt 64




>RF00027;let-7;AAJJ01000960.1/12168-12093 7070:Tribolium castaneum
          (red flour beetle)
          Length = 76

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 10 ttgaggtagtaggttgtatagta 32
          |||||||||||||||||||||||
Sbjct: 6  ttgaggtagtaggttgtatagta 28




>RF00027;let-7;ABEG01002465.1/18268-18339 135651:Caenorhabditis
          brenneri
          Length = 72

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 ttgaggtagtaggttgtatagt 31
          ||||||||||||||||||||||
Sbjct: 5  ttgaggtagtaggttgtatagt 26




>RF00027;let-7;AAGU02067998.1/2847-2772 9785:Loxodonta africana
          (African savanna elephant)
          Length = 76

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 ttgaggtagtaggttgtatagt 31
          ||||||||||||||||||||||
Sbjct: 6  ttgaggtagtaggttgtatagt 27




>RF00027;let-7;CAAB01004143.1/18701-18777 31033:Takifugu rubripes
          Length = 77

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 ttgaggtagtaggttgtatagt 31
          ||||||||||||||||||||||
Sbjct: 6  ttgaggtagtaggttgtatagt 27




>RF00027;let-7;AANH01000597.1/43752-43676 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 77

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 ttgaggtagtaggttgtatagt 31
          ||||||||||||||||||||||
Sbjct: 6  ttgaggtagtaggttgtatagt 27




>RF00027;let-7;BAAE01285721.1/657-581 8090:Oryzias latipes
          (Japanese medaka)
          Length = 77

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 ttgaggtagtaggttgtatagt 31
          ||||||||||||||||||||||
Sbjct: 6  ttgaggtagtaggttgtatagt 27




>RF00027;let-7;ABIR01000029.1/50721-50818 6334:Trichinella
          spiralis
          Length = 98

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tgaggtagtaggttgtatagt 31
          |||||||||||||||||||||
Sbjct: 7  tgaggtagtaggttgtatagt 27




>RF00027;let-7;ABLA01021413.1/563-640 51029:Heterodera glycines
          Length = 78

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tgaggtagtaggttgtatagt 31
          |||||||||||||||||||||
Sbjct: 7  tgaggtagtaggttgtatagt 27




>RF00027;let-7;AAQA01000457.1/25368-25290 6279:Brugia malayi
          Length = 79

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tgaggtagtaggttgtatagt 31
          |||||||||||||||||||||
Sbjct: 7  tgaggtagtaggttgtatagt 27




>RF00027;let-7;Z70203.2/12451-12379 6239:Caenorhabditis elegans
          Length = 73

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tgaggtagtaggttgtatagt 31
          |||||||||||||||||||||
Sbjct: 6  tgaggtagtaggttgtatagt 26




>RF00027;let-7;AAGD02006482.1/22892-22821 31234:Caenorhabditis
          remanei
          Length = 72

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tgaggtagtaggttgtatagt 31
          |||||||||||||||||||||
Sbjct: 6  tgaggtagtaggttgtatagt 26




>RF00027;let-7;AC084471.1/10992-10920 6238:Caenorhabditis briggsae
          Length = 73

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tgaggtagtaggttgtatagt 31
          |||||||||||||||||||||
Sbjct: 6  tgaggtagtaggttgtatagt 26




>RF00027;let-7;ABKE01000556.1/121-205 54126:Pristionchus pacificus
          Length = 85

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tgaggtagtaggttgtatagt 31
          |||||||||||||||||||||
Sbjct: 6  tgaggtagtaggttgtatagt 26




>RF00027;let-7;AAFR03057393.1/5692-5610 13616:Monodelphis
          domestica (gray short-tailed opossum)
          Length = 83

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tgaggtagtaggttgtatagt 31
          |||||||||||||||||||||
Sbjct: 7  tgaggtagtaggttgtatagt 27




>RF00027;let-7;AANN01118339.1/762-680 9365:Erinaceus europaeus
          (western European hedgehog)
          Length = 83

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tgaggtagtaggttgtatagt 31
          |||||||||||||||||||||
Sbjct: 7  tgaggtagtaggttgtatagt 27




>RF00027;let-7;AAKN02054982.1/20495-20418 10141:Cavia porcellus
          (domestic guinea pig)
          Length = 78

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tgaggtagtaggttgtatagt 31
          |||||||||||||||||||||
Sbjct: 7  tgaggtagtaggttgtatagt 27




>RF00027;let-7;ABRQ01826413.1/555-477 9813:Procavia capensis (cape
          rock hyrax)
          Length = 79

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tgaggtagtaggttgtatagt 31
          |||||||||||||||||||||
Sbjct: 7  tgaggtagtaggttgtatagt 27




>RF00027;let-7;ABQF01051678.1/9631-9544 59729:Taeniopygia guttata
          Length = 88

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tgaggtagtaggttgtatagt 31
          |||||||||||||||||||||
Sbjct: 7  tgaggtagtaggttgtatagt 27




>RF00027;let-7;AADN02044881.1/4561-4474 9031:Gallus gallus
          (chicken)
          Length = 88

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tgaggtagtaggttgtatagt 31
          |||||||||||||||||||||
Sbjct: 7  tgaggtagtaggttgtatagt 27




>RF00027;let-7;CR847944.11/44965-45050 7955:Danio rerio
          (zebrafish)
          Length = 86

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tgaggtagtaggttgtatagt 31
          |||||||||||||||||||||
Sbjct: 7  tgaggtagtaggttgtatagt 27




>RF00027;let-7;BX897734.11/94677-94763 7955:Danio rerio
          (zebrafish)
          Length = 87

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tgaggtagtaggttgtatagt 31
          |||||||||||||||||||||
Sbjct: 7  tgaggtagtaggttgtatagt 27




>RF00027;let-7;BX284646.4/46451-46375 7955:Danio rerio (zebrafish)
          Length = 77

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tgaggtagtaggttgtatagt 31
          |||||||||||||||||||||
Sbjct: 7  tgaggtagtaggttgtatagt 27




>RF00027;let-7;BX663520.9/232739-232815 7955:Danio rerio
          (zebrafish)
          Length = 77

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tgaggtagtaggttgtatagt 31
          |||||||||||||||||||||
Sbjct: 7  tgaggtagtaggttgtatagt 27




>RF00027;let-7;CAAB01006742.1/7972-8057 31033:Takifugu rubripes
          Length = 86

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tgaggtagtaggttgtatagt 31
          |||||||||||||||||||||
Sbjct: 7  tgaggtagtaggttgtatagt 27




>RF00027;let-7;CAAB01000128.1/27883-27800 31033:Takifugu rubripes
          Length = 84

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tgaggtagtaggttgtatagt 31
          |||||||||||||||||||||
Sbjct: 7  tgaggtagtaggttgtatagt 27




>RF00027;let-7;AANH01006181.1/186487-186407 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 81

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tgaggtagtaggttgtatagt 31
          |||||||||||||||||||||
Sbjct: 7  tgaggtagtaggttgtatagt 27




>RF00027;let-7;AANH01007473.1/5803-5888 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 86

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tgaggtagtaggttgtatagt 31
          |||||||||||||||||||||
Sbjct: 7  tgaggtagtaggttgtatagt 27




>RF00027;let-7;BAAF04050050.1/5012-4932 8090:Oryzias latipes
          (Japanese medaka)
          Length = 81

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tgaggtagtaggttgtatagt 31
          |||||||||||||||||||||
Sbjct: 7  tgaggtagtaggttgtatagt 27




>RF00027;let-7;BAAE01151389.1/288-202 8090:Oryzias latipes
          (Japanese medaka)
          Length = 87

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tgaggtagtaggttgtatagt 31
          |||||||||||||||||||||
Sbjct: 7  tgaggtagtaggttgtatagt 27




>RF00027;let-7;BAAE01055973.1/4881-4962 8090:Oryzias latipes
          (Japanese medaka)
          Length = 82

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tgaggtagtaggttgtatagt 31
          |||||||||||||||||||||
Sbjct: 7  tgaggtagtaggttgtatagt 27




>RF00027;let-7;BAAF04096587.1/14029-13948 8090:Oryzias latipes
          (Japanese medaka)
          Length = 82

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tgaggtagtaggttgtatagt 31
          |||||||||||||||||||||
Sbjct: 7  tgaggtagtaggttgtatagt 27




>RF00027;let-7;AAVX01108779.1/886-806 7868:Callorhinchus milii
          (ghost shark)
          Length = 81

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tgaggtagtaggttgtatagt 31
          |||||||||||||||||||||
Sbjct: 7  tgaggtagtaggttgtatagt 27




>RF00027;let-7;AAVX01007479.1/3161-3085 7868:Callorhinchus milii
          (ghost shark)
          Length = 77

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tgaggtagtaggttgtatagt 31
          |||||||||||||||||||||
Sbjct: 7  tgaggtagtaggttgtatagt 27




>RF00027;let-7;AAVX01338774.1/620-544 7868:Callorhinchus milii
          (ghost shark)
          Length = 77

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tgaggtagtaggttgtatagt 31
          |||||||||||||||||||||
Sbjct: 7  tgaggtagtaggttgtatagt 27




>RF00027;let-7;AAVX01586337.1/294-214 7868:Callorhinchus milii
          (ghost shark)
          Length = 81

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tgaggtagtaggttgtatagt 31
          |||||||||||||||||||||
Sbjct: 7  tgaggtagtaggttgtatagt 27




>RF00027;let-7;ABEP02005607.1/34812-34887 7739:Branchiostoma
          floridae (Florida lancelet)
          Length = 76

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tgaggtagtaggttgtatagt 31
          |||||||||||||||||||||
Sbjct: 7  tgaggtagtaggttgtatagt 27




>RF00027;let-7;ABEP02005607.1/36672-36748 7739:Branchiostoma
          floridae (Florida lancelet)
          Length = 77

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tgaggtagtaggttgtatagt 31
          |||||||||||||||||||||
Sbjct: 7  tgaggtagtaggttgtatagt 27




>RF00027;let-7;AAZX01015868.1/1070-988 7425:Nasonia vitripennis
          (jewel wasp)
          Length = 83

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tgaggtagtaggttgtatagt 31
          |||||||||||||||||||||
Sbjct: 7  tgaggtagtaggttgtatagt 27