miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00688;MIR394;BT066604.1/356-467 4577:Zea mays
Length = 112
Score = 180 bits (91), Expect = 4e-45
Identities = 105/112 (93%)
Strand = Plus / Plus
Query: 28 cttactgagagttccttggcattctgtccacctcccttcttgacgatcttgcagaaagtt 87
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttactgagagttccttggcattctgtccacctcccttcttgacgatcttgcagaaagtt 60
Query: 88 tgcnnnnnnngtttgtttggaggtgggcatactgccaatggagctgcgtagg 139
||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgctttttttgtttgtttggaggtgggcatactgccaatggagctgcgtagg 112
>RF00688;MIR394;ABXC01002939.1/43674-43574 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 75.8 bits (38), Expect = 2e-13
Identities = 92/112 (82%), Gaps = 11/112 (9%)
Strand = Plus / Plus
Query: 28 cttactgagagttccttggcattctgtccacctcccttcttgacgatcttgcagaaagtt 87
|||||||| |||||||||||||||||||||||||| | | |||||||||||||||||
Sbjct: 1 cttactgaaagttccttggcattctgtccacctccttgccgatcgatcttgcagaaagtt 60
Query: 88 tgcnnnnnnngtttgtttggaggtgggcatactgccaatggagctgcgtagg 139
| || ||||||||||||||||||||||||||||||| |||||
Sbjct: 61 t-----------ttttttggaggtgggcatactgccaatggagctgtgtagg 101
>RF00688;MIR394;EU947221.1/92-210 4577:Zea mays
Length = 119
Score = 69.9 bits (35), Expect = 1e-11
Identities = 50/54 (92%), Gaps = 2/54 (3%)
Strand = Plus / Plus
Query: 35 agagttccttggcattctgtccacctcccttcttgacgatcttgcagaaagttt 88
|||||||||||||||||||||||||||| ||| | ||||||||||||||||||
Sbjct: 9 agagttccttggcattctgtccacctcc--tctcgccgatcttgcagaaagttt 60
Score = 61.9 bits (31), Expect = 3e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 103 tttggaggtgggcatactgccaatggagctg 133
|||||||||||||||||||||||||||||||
Sbjct: 83 tttggaggtgggcatactgccaatggagctg 113
>RF00688;MIR394;ABXC01001499.1/165004-165103 4558:Sorghum bicolor
(sorghum)
Length = 100
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 30 tactgagagttccttggcattctgtccacctcc 62
|||||||||||||||||||||||||||||||||
Sbjct: 3 tactgagagttccttggcattctgtccacctcc 35
Score = 58.0 bits (29), Expect = 4e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 103 tttggaggtgggcatactgccaatggagctgcgtagg 139
||||||||||| ||||||||||||||||||| |||||
Sbjct: 64 tttggaggtggacatactgccaatggagctgtgtagg 100
>RF00688;MIR394;AACV01005112.1/32080-32191 39947:Oryza sativa
Japonica Group
Length = 112
Score = 63.9 bits (32), Expect = 7e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 104 ttggaggtgggcatactgccaatggagctgcgtagg 139
|||||||||||||||||||||||||||||| |||||
Sbjct: 77 ttggaggtgggcatactgccaatggagctgtgtagg 112
Score = 61.9 bits (31), Expect = 3e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 28 cttactgagagttccttggcattctgtccacctcc 62
|||||||||||||| ||||||||||||||||||||
Sbjct: 1 cttactgagagttctttggcattctgtccacctcc 35
>RF00688;MIR394;AC189318.1/31773-31892 51351:Brassica rapa subsp.
pekinensis
Length = 120
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 35 agagttccttggcattctgtccacctcccttct 67
||||||| |||||||||||||||||||| ||||
Sbjct: 6 agagttctttggcattctgtccacctcctttct 38
