miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00143;mir-6;AAPP01018770.1/57538-57612 7217:Drosophila
          ananassae
          Length = 75

 Score =  149 bits (75), Expect = 6e-36
 Identities = 75/75 (100%)
 Strand = Plus / Plus

                                                                      
Query: 2  aaaaagaagggaacggtcgctgctgatgtagttattcgcatcatttatatcacagtggct 61
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  aaaaagaagggaacggtcgctgctgatgtagttattcgcatcatttatatcacagtggct 60

                         
Query: 62 gttcttttttgtttg 76
          |||||||||||||||
Sbjct: 61 gttcttttttgtttg 75




>RF00143;mir-6;AAIZ01001618.1/40271-40349 7234:Drosophila
          persimilis
          Length = 79

 Score = 91.7 bits (46), Expect = 1e-18
 Identities = 71/79 (89%), Gaps = 4/79 (5%)
 Strand = Plus / Plus

                                                                      
Query: 2  aaaaagaagggaacggtcgctgctgatgtagtta----ttcgcatcatttatatcacagt 57
          ||||||||||||||||| |||||||||||||||     ||||||  ||||||||||||||
Sbjct: 1  aaaaagaagggaacggttgctgctgatgtagttcaagtttcgcacaatttatatcacagt 60

                             
Query: 58 ggctgttcttttttgtttg 76
          |||||||||||||||||||
Sbjct: 61 ggctgttcttttttgtttg 79




>RF00143;mir-6;AAPT01020768.1/61474-61396 7222:Drosophila
          grimshawi
          Length = 79

 Score = 65.9 bits (33), Expect = 7e-11
 Identities = 67/78 (85%), Gaps = 4/78 (5%)
 Strand = Plus / Plus

                                                                      
Query: 2  aaaaagaagggaacggtcgctgctgatgtagtt----attcgcatcatttatatcacagt 57
          |||| |||| ||||| |||||||||||||||||    ||||  ||  |||||||||||||
Sbjct: 1  aaaaggaagagaacgctcgctgctgatgtagttcatgattcaaatattttatatcacagt 60

                            
Query: 58 ggctgttcttttttgttt 75
          ||||||||||||||||||
Sbjct: 61 ggctgttcttttttgttt 78




>RF00143;mir-6;AAPU01010225.1/182811-182733 7230:Drosophila
          mojavensis
          Length = 79

 Score = 61.9 bits (31), Expect = 1e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 45 tttatatcacagtggctgttcttttttgttt 75
          |||||||||||||||||||||||||||||||
Sbjct: 48 tttatatcacagtggctgttcttttttgttt 78




>RF00143;mir-6;AANI01014795.1/40023-40100 7244:Drosophila virilis
          Length = 78

 Score = 61.9 bits (31), Expect = 1e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 45 tttatatcacagtggctgttcttttttgttt 75
          |||||||||||||||||||||||||||||||
Sbjct: 47 tttatatcacagtggctgttcttttttgttt 77




>RF00143;mir-6;AAEU02000463.1/591532-591454 7245:Drosophila yakuba
          Length = 79

 Score = 60.0 bits (30), Expect = 4e-09
 Identities = 67/79 (84%), Gaps = 4/79 (5%)
 Strand = Plus / Plus

                                                                      
Query: 2  aaaaagaagggaacggtcgctgctgatgtagtt----attcgcatcatttatatcacagt 57
          ||||||||||||||||| |||| ||||||||||    | || |   ||||||||||||||
Sbjct: 1  aaaaagaagggaacggttgctgatgatgtagttcgaaactctctcaatttatatcacagt 60

                             
Query: 58 ggctgttcttttttgtttg 76
          |||||||||||||| ||||
Sbjct: 61 ggctgttcttttttatttg 79




>RF00143;mir-6;AAQB01006291.1/70803-70723 7260:Drosophila
          willistoni
          Length = 81

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 47 tatatcacagtggctgttcttttttgttt 75
          |||||||||||||||||||||||||||||
Sbjct: 52 tatatcacagtggctgttcttttttgttt 80



 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 2  aaaaagaagggaacggtcgctgctgatgtagt 33
          ||||||||||||||||| |||| |||||||||
Sbjct: 1  aaaaagaagggaacggttgctgttgatgtagt 32




>RF00143;mir-6;AAPU01010225.1/183158-183087 7230:Drosophila
          mojavensis
          Length = 72

 Score = 56.0 bits (28), Expect = 6e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 43 catttatatcacagtggctgttcttttt 70
          ||||||||||||||||||||||||||||
Sbjct: 39 catttatatcacagtggctgttcttttt 66




>RF00143;mir-6;AAQB01006291.1/70967-70870 7260:Drosophila
          willistoni
          Length = 98

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 47 tatatcacagtggctgttcttttttgttt 75
          |||||||||||||||||||||||| ||||
Sbjct: 69 tatatcacagtggctgttctttttggttt 97




>RF00143;mir-6;AAIZ01001618.1/40125-40208 7234:Drosophila
          persimilis
          Length = 84

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 47 tatatcacagtggctgttcttttt 70
          ||||||||||||||||||||||||
Sbjct: 55 tatatcacagtggctgttcttttt 78




>RF00143;mir-6;AAPP01018770.1/57233-57304 7217:Drosophila
          ananassae
          Length = 72

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 47 tatatcacagtggctgttcttttt 70
          ||||||||||||||||||||||||
Sbjct: 43 tatatcacagtggctgttcttttt 66




>RF00143;mir-6;AAPP01018770.1/57378-57462 7217:Drosophila
          ananassae
          Length = 85

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 47 tatatcacagtggctgttcttttt 70
          ||||||||||||||||||||||||
Sbjct: 56 tatatcacagtggctgttcttttt 79




>RF00143;mir-6;AAGH01003023.1/9218-9292 7240:Drosophila simulans
          Length = 75

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 47 tatatcacagtggctgttcttttt 70
          ||||||||||||||||||||||||
Sbjct: 46 tatatcacagtggctgttcttttt 69




>RF00143;mir-6;AADE01001895.1/3626-3699 46245:Drosophila
          pseudoobscura pseudoobscura
          Length = 74

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 47 tatatcacagtggctgttcttttt 70
          ||||||||||||||||||||||||
Sbjct: 45 tatatcacagtggctgttcttttt 68




>RF00143;mir-6;AAST01030396.1/2399-2475 7240:Drosophila simulans
          Length = 77

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 47 tatatcacagtggctgttcttttt 70
          ||||||||||||||||||||||||
Sbjct: 48 tatatcacagtggctgttcttttt 71




>RF00143;mir-6;AAPT01006453.1/3396-3470 7222:Drosophila grimshawi
          Length = 75

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 47 tatatcacagtggctgttcttttt 70
          ||||||||||||||||||||||||
Sbjct: 46 tatatcacagtggctgttcttttt 69




>RF00143;mir-6;AAPT01006453.1/3535-3614 7222:Drosophila grimshawi
          Length = 80

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 47 tatatcacagtggctgttcttttt 70
          ||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74




>RF00143;mir-6;AANI01014795.1/39694-39769 7244:Drosophila virilis
          Length = 76

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 47 tatatcacagtggctgttcttttt 70
          ||||||||||||||||||||||||
Sbjct: 47 tatatcacagtggctgttcttttt 70




>RF00143;mir-6;AAPU01010225.1/182992-182911 7230:Drosophila
          mojavensis
          Length = 82

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 47 tatatcacagtggctgttcttttt 70
          ||||||||||||||||||||||||
Sbjct: 53 tatatcacagtggctgttcttttt 76




>RF00143;mir-6;AAQB01006291.1/71126-71052 7260:Drosophila
          willistoni
          Length = 75

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 48 atatcacagtggctgttcttttt 70
          |||||||||||||||||||||||
Sbjct: 47 atatcacagtggctgttcttttt 69




>RF00143;mir-6;AANI01014795.1/39849-39929 7244:Drosophila virilis
          Length = 81

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 48 atatcacagtggctgttcttttt 70
          |||||||||||||||||||||||
Sbjct: 53 atatcacagtggctgttcttttt 75




>RF00143;mir-6;AASV01054526.1/876-807 7240:Drosophila simulans
          Length = 70

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 48 atatcacagtggctgttctttt 69
          ||||||||||||||||||||||
Sbjct: 43 atatcacagtggctgttctttt 64