miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00688;MIR394;EU947221.1/92-210 4577:Zea mays
Length = 119
Score = 163 bits (82), Expect = 9e-40
Identities = 109/120 (90%), Gaps = 1/120 (0%)
Strand = Plus / Plus
Query: 17 cttactgaagagttccttggcattctgtccacctcctctcgccgatcttgcagaaagttt 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttactgaagagttccttggcattctgtccacctcctctcgccgatcttgcagaaagttt 60
Query: 77 accagttctgttgcannnnnnnnnnnggaggtgggcatactgccaatggagctgtgcagg 136
||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 61 accagttctgttgca-ttttttttttggaggtgggcatactgccaatggagctgtgcagg 119
>RF00688;MIR394;BT066604.1/356-467 4577:Zea mays
Length = 112
Score = 69.9 bits (35), Expect = 1e-11
Identities = 50/54 (92%), Gaps = 2/54 (3%)
Strand = Plus / Plus
Query: 25 agagttccttggcattctgtccacctcc--tctcgccgatcttgcagaaagttt 76
|||||||||||||||||||||||||||| ||| | ||||||||||||||||||
Sbjct: 8 agagttccttggcattctgtccacctcccttcttgacgatcttgcagaaagttt 61
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 103 ggaggtgggcatactgccaatggagctg 130
||||||||||||||||||||||||||||
Sbjct: 79 ggaggtgggcatactgccaatggagctg 106
>RF00688;MIR394;ABXC01002939.1/43674-43574 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 60.0 bits (30), Expect = 9e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 103 ggaggtgggcatactgccaatggagctgtg 132
||||||||||||||||||||||||||||||
Sbjct: 68 ggaggtgggcatactgccaatggagctgtg 97
Score = 58.0 bits (29), Expect = 4e-08
Identities = 36/37 (97%), Gaps = 1/37 (2%)
Strand = Plus / Plus
Query: 17 cttactgaagagttccttggcattctgtccacctcct 53
||||||||| |||||||||||||||||||||||||||
Sbjct: 1 cttactgaa-agttccttggcattctgtccacctcct 36
>RF00688;MIR394;AACV01005112.1/32080-32191 39947:Oryza sativa
Japonica Group
Length = 112
Score = 60.0 bits (30), Expect = 9e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 103 ggaggtgggcatactgccaatggagctgtg 132
||||||||||||||||||||||||||||||
Sbjct: 79 ggaggtgggcatactgccaatggagctgtg 108
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 25 agagttccttggcattctgtccacctcct 53
||||||| |||||||||||||||||||||
Sbjct: 8 agagttctttggcattctgtccacctcct 36
>RF00688;MIR394;ABXC01001499.1/165004-165103 4558:Sorghum bicolor
(sorghum)
Length = 100
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 25 agagttccttggcattctgtccacctcct 53
|||||||||||||||||||||||||||||
Sbjct: 8 agagttccttggcattctgtccacctcct 36
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 103 ggaggtgggcatactgccaatggagctgtg 132
|||||||| |||||||||||||||||||||
Sbjct: 67 ggaggtggacatactgccaatggagctgtg 96
>RF00688;MIR394;AC189318.1/31773-31892 51351:Brassica rapa subsp.
pekinensis
Length = 120
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 25 agagttccttggcattctgtccacctcct 53
||||||| |||||||||||||||||||||
Sbjct: 6 agagttctttggcattctgtccacctcct 34
>RF00688;MIR394;AC009978.3/24986-25106 3702:Arabidopsis thaliana
(thale cress)
Length = 121
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 33 ttggcattctgtccacctcctctc 56
||||||||||||||||||||||||
Sbjct: 14 ttggcattctgtccacctcctctc 37
