miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00813;mir-11;AAPP01019528.1/447265-447343 7217:Drosophila
          ananassae
          Length = 79

 Score =  115 bits (58), Expect = 8e-26
 Identities = 72/79 (91%)
 Strand = Plus / Plus

                                                                      
Query: 1  gcacttgccaagaactctctctgtgacttgtgtccnnnnnnncgaaactcacatcacagt 60
          |||||||||||||||||||||||||||||||||||       ||||||||||||||||||
Sbjct: 1  gcacttgccaagaactctctctgtgacttgtgtcctttttttcgaaactcacatcacagt 60

                             
Query: 61 ctgagttcttgctgagagc 79
          |||||||||||||||||||
Sbjct: 61 ctgagttcttgctgagagc 79




>RF00813;mir-11;AAFS01000036.1/6151-6079 46245:Drosophila
          pseudoobscura pseudoobscura
          Length = 73

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 50 cacatcacagtctgagttcttgctgag 76
          |||||||||||||||||||||||||||
Sbjct: 44 cacatcacagtctgagttcttgctgag 70




>RF00813;mir-11;AAWU01011517.1/5912-5834 7176:Culex
          quinquefasciatus (southern house mosquito)
          Length = 79

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 49 tcacatcacagtctgagttcttgct 73
          |||||||||||||||||||||||||
Sbjct: 49 tcacatcacagtctgagttcttgct 73




>RF00813;mir-11;AAGE02023911.1/46406-46483 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 78

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 49 tcacatcacagtctgagttcttgct 73
          |||||||||||||||||||||||||
Sbjct: 48 tcacatcacagtctgagttcttgct 72




>RF00813;mir-11;ABKP02017914.1/853-942 377271:Anopheles gambiae M
          Length = 90

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 49 tcacatcacagtctgagttcttgct 73
          |||||||||||||||||||||||||
Sbjct: 60 tcacatcacagtctgagttcttgct 84




>RF00813;mir-11;AAQB01008624.1/142840-142924 7260:Drosophila
          willistoni
          Length = 85

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 52 catcacagtctgagttcttgctgag 76
          |||||||||||||||||||||||||
Sbjct: 58 catcacagtctgagttcttgctgag 82




>RF00813;mir-11;AAPT01019388.1/147488-147568 7222:Drosophila
          grimshawi
          Length = 81

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 52 catcacagtctgagttcttgctgag 76
          |||||||||||||||||||||||||
Sbjct: 54 catcacagtctgagttcttgctgag 78



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 9  caagaactctctctgtgacttg 30
          ||||||||||||||||||||||
Sbjct: 9  caagaactctctctgtgacttg 30




>RF00813;mir-11;AANI01017139.1/215647-215727 7244:Drosophila
          virilis
          Length = 81

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 52 catcacagtctgagttcttgct 73
          ||||||||||||||||||||||
Sbjct: 54 catcacagtctgagttcttgct 75




>RF00813;mir-11;AAPU01010953.1/16155-16075 7230:Drosophila
          mojavensis
          Length = 81

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 52 catcacagtctgagttcttgct 73
          ||||||||||||||||||||||
Sbjct: 54 catcacagtctgagttcttgct 75