miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00667;mir-33;AC154052.1/87680-87612 7227:Drosophila
melanogaster (fruit fly)
Length = 69
Score = 107 bits (54), Expect = 2e-23
Identities = 63/66 (95%)
Strand = Plus / Plus
Query: 15 aggtgcattgtagtcgcattgtctgtcccacttgctccaggcaatacaactgcagtgcaa 74
|||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct: 4 aggtgcattgtagtcgcattgtctgtcccaattgcttcaggcaatacaacttcagtgcaa 63
Query: 75 gctctg 80
||||||
Sbjct: 64 gctctg 69
>RF00667;mir-33;AAFS01000103.1/61981-62050 46245:Drosophila
pseudoobscura pseudoobscura
Length = 70
Score = 83.8 bits (42), Expect = 3e-16
Identities = 64/70 (91%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 12 cgcaggtgcattgtagtcgcattgtctgtcccacttg-ctccaggcaatacaactgcagt 70
||||||||||||||||||||||||||||||| |||| | ||||||||||||||||| |
Sbjct: 1 cgcaggtgcattgtagtcgcattgtctgtccatcttgatttcaggcaatacaactgcaat 60
Query: 71 gcaagctctg 80
||||||||||
Sbjct: 61 gcaagctctg 70
>RF00667;mir-33;AANI01017473.1/521223-521153 7244:Drosophila
virilis
Length = 71
Score = 69.9 bits (35), Expect = 5e-12
Identities = 59/66 (89%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 15 aggtgcattgtagtcgcattgtctgtccc--acttgctccaggcaatacaactgcagtgc 72
||||||||||||||||||||||||||| | | |||| | |||||||||||||||||||
Sbjct: 4 aggtgcattgtagtcgcattgtctgtctcaaatttgcccgcggcaatacaactgcagtgc 63
Query: 73 aagctc 78
||||||
Sbjct: 64 aagctc 69
>RF00667;mir-33;AAQB01006223.1/189436-189525 7260:Drosophila
willistoni
Length = 90
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 aggtgcattgtagtcgcattgtctgt 40
||||||||||||||||||||||||||
Sbjct: 4 aggtgcattgtagtcgcattgtctgt 29
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 52 caggcaatacaactgcagtgcaagct 77
||||||||||||||||||||||||||
Sbjct: 62 caggcaatacaactgcagtgcaagct 87
>RF00667;mir-33;AAPU01011618.1/111826-111755 7230:Drosophila
mojavensis
Length = 72
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 aggtgcattgtagtcgcattgtctgt 40
||||||||||||||||||||||||||
Sbjct: 4 aggtgcattgtagtcgcattgtctgt 29
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 ggcaatacaactgcagtgcaagctc 78
|||||||||||||||||||||||||
Sbjct: 46 ggcaatacaactgcagtgcaagctc 70
