miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00822;mir-274;AAPP01019289.1/330187-330287 7217:Drosophila
           ananassae
          Length = 101

 Score =  190 bits (96), Expect = 2e-48
 Identities = 96/96 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttgcagtttcgttttgtgaccgacactaacgggtattttacaggacatacaggattac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6   tgttgcagtttcgttttgtgaccgacactaacgggtattttacaggacatacaggattac 65

                                               
Query: 61  tcgtttttgcgatcacaaatcctgaaattgcagcaa 96
           ||||||||||||||||||||||||||||||||||||
Sbjct: 66  tcgtttttgcgatcacaaatcctgaaattgcagcaa 101




>RF00822;mir-274;AAKO01000079.1/37948-38047 7238:Drosophila
           sechellia
          Length = 100

 Score =  103 bits (52), Expect = 4e-22
 Identities = 86/96 (89%), Gaps = 1/96 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttgcagtttcgttttgtgaccgacactaacgggtattttacaggacatacaggattac 60
           ||||||||||||||||||||||||||||||||||||| ||    |  ||  |||||||||
Sbjct: 6   tgttgcagtttcgttttgtgaccgacactaacgggtaattgtttgatcac-caggattac 64

                                               
Query: 61  tcgtttttgcgatcacaaatcctgaaattgcagcaa 96
           ||||||||||||||||||||| ||||||||||||||
Sbjct: 65  tcgtttttgcgatcacaaatcatgaaattgcagcaa 100




>RF00822;mir-274;AAQB01007682.1/34817-34703 7260:Drosophila
           willistoni
          Length = 115

 Score = 71.9 bits (36), Expect = 1e-12
 Identities = 39/40 (97%)
 Strand = Plus / Plus

                                                   
Query: 57  ttactcgtttttgcgatcacaaatcctgaaattgcagcaa 96
           |||||||||||||||||||||||| |||||||||||||||
Sbjct: 76  ttactcgtttttgcgatcacaaattctgaaattgcagcaa 115



 Score = 65.9 bits (33), Expect = 9e-11
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                               
Query: 1  tgttgcagtttcgttttgtgaccgacactaacgggta 37
          |||||||||||| ||||||||||||||||||||||||
Sbjct: 6  tgttgcagtttcattttgtgaccgacactaacgggta 42




>RF00822;mir-274;AAPT01020611.1/127253-127143 7222:Drosophila
          grimshawi
          Length = 111

 Score = 65.9 bits (33), Expect = 9e-11
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                               
Query: 1  tgttgcagtttcgttttgtgaccgacactaacgggta 37
          ||||||||||||| |||||||||||||||||||||||
Sbjct: 6  tgttgcagtttcggtttgtgaccgacactaacgggta 42



 Score = 63.9 bits (32), Expect = 3e-10
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                               
Query: 57  ttactcgtttttgcgatcacaaatcctgaaattgca 92
           |||||||||||||||||||||||| |||||||||||
Sbjct: 72  ttactcgtttttgcgatcacaaattctgaaattgca 107




>RF00822;mir-274;AAPU01011627.1/22605-22713 7230:Drosophila
          mojavensis
          Length = 109

 Score = 65.9 bits (33), Expect = 9e-11
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                               
Query: 1  tgttgcagtttcgttttgtgaccgacactaacgggta 37
          ||||||||||||| |||||||||||||||||||||||
Sbjct: 6  tgttgcagtttcggtttgtgaccgacactaacgggta 42



 Score = 61.9 bits (31), Expect = 1e-09
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                              
Query: 58  tactcgtttttgcgatcacaaatcctgaaattgca 92
           ||||||||||||||||||||||| |||||||||||
Sbjct: 71  tactcgtttttgcgatcacaaattctgaaattgca 105




>RF00822;mir-274;AANI01017486.1/215294-215400 7244:Drosophila
          virilis
          Length = 107

 Score = 65.9 bits (33), Expect = 9e-11
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                               
Query: 1  tgttgcagtttcgttttgtgaccgacactaacgggta 37
          ||||||||||||| |||||||||||||||||||||||
Sbjct: 6  tgttgcagtttcggtttgtgaccgacactaacgggta 42



 Score = 63.9 bits (32), Expect = 3e-10
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                               
Query: 57  ttactcgtttttgcgatcacaaatcctgaaattgca 92
           |||||||||||||||||||||||| |||||||||||
Sbjct: 68  ttactcgtttttgcgatcacaaattctgaaattgca 103




>RF00822;mir-274;AADE01002814.1/8876-8780 46245:Drosophila
          pseudoobscura pseudoobscura
          Length = 97

 Score = 60.0 bits (30), Expect = 5e-09
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                            
Query: 4  tgcagtttcgttttgtgaccgacactaacgggta 37
          ||||||||| ||||||||||||||||||||||||
Sbjct: 9  tgcagtttcattttgtgaccgacactaacgggta 42