miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00747;mir-283;AAQB01006319.1/8842-8742 7260:Drosophila willistoni
          Length = 101

 Score =  131 bits (66), Expect = 2e-30
 Identities = 89/94 (94%), Gaps = 2/94 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   attcttaaaggtaaatatcagctggtaattctgggagctatgcct-gat-tatgaaacac 61
           ||||| ||||||||||||||||||||||||||||||||||||||| ||| | ||||||||
Sbjct: 7   attctcaaaggtaaatatcagctggtaattctgggagctatgcctagatatttgaaacac 66

                                             
Query: 62  tcggaatttcagttggtatcgactttttcgaatt 95
           |||||||||||||||||||||||||||| |||||
Sbjct: 67  tcggaatttcagttggtatcgacttttttgaatt 100




>RF00747;mir-283;AAPU01008564.1/40966-41063 7230:Drosophila
          mojavensis
          Length = 98

 Score =  113 bits (57), Expect = 4e-25
 Identities = 85/93 (91%), Gaps = 1/93 (1%)
 Strand = Plus / Plus

                                                                      
Query: 3  gattcttaaaggtaaatatcagctggtaattctgggagctatgcctgattatgaaacact 62
          |||||| |||||||||||||||||||||||||||||||| |||||  | |||||||||||
Sbjct: 6  gattctcaaaggtaaatatcagctggtaattctgggagcaatgcc-caatatgaaacact 64

                                           
Query: 63 cggaatttcagttggtatcgactttttcgaatt 95
          ||||||||||||||||||  ||||||| |||||
Sbjct: 65 cggaatttcagttggtatatacttttttgaatt 97




>RF00747;mir-283;ABKQ02004749.1/31643-31736 377270:Anopheles
          gambiae S
          Length = 94

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 10 aaaggtaaatatcagctggtaattct 35
          ||||||||||||||||||||||||||
Sbjct: 11 aaaggtaaatatcagctggtaattct 36




>RF00747;mir-283;AAWU01005348.1/2399-2495 7176:Culex
          quinquefasciatus (southern house mosquito)
          Length = 97

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 10 aaaggtaaatatcagctggtaattctggg 38
          |||||| ||||||||||||||||||||||
Sbjct: 11 aaaggtcaatatcagctggtaattctggg 39




>RF00747;mir-283;AAGE02004323.1/32429-32333 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 97

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 10 aaaggtaaatatcagctggtaattctggg 38
          |||||| ||||||||||||||||||||||
Sbjct: 11 aaaggtcaatatcagctggtaattctggg 39




>RF00747;mir-283;BAAB01105947.1/481-397 7091:Bombyx mori (domestic
          silkworm)
          Length = 85

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 15 taaatatcagctggtaattctggg 38
          ||||||||||||||||||||||||
Sbjct: 16 taaatatcagctggtaattctggg 39




>RF00747;mir-283;AAZX01000006.1/24204-24295 7425:Nasonia
          vitripennis (jewel wasp)
          Length = 92

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 16 aaatatcagctggtaattctggga 39
          ||||||||||||||||||||||||
Sbjct: 19 aaatatcagctggtaattctggga 42




>RF00747;mir-283;AADG05008150.1/23792-23703 7460:Apis mellifera
          (honey bee)
          Length = 90

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 16 aaatatcagctggtaattctggga 39
          ||||||||||||||||||||||||
Sbjct: 19 aaatatcagctggtaattctggga 42




>RF00747;mir-283;AAJJ01001605.1/25781-25866 7070:Tribolium
          castaneum (red flour beetle)
          Length = 86

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 16 aaatatcagctggtaattctggg 38
          |||||||||||||||||||||||
Sbjct: 17 aaatatcagctggtaattctggg 39