miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00865;MIR169_5;EU941000.1/258-87 4577:Zea mays
Length = 172
Score = 341 bits (172), Expect = 4e-93
Identities = 172/172 (100%)
Strand = Plus / Minus
Query: 73 agatggagagccccttttggtagccaagaatgacttgcctatgcacgccctctgttggca 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 agatggagagccccttttggtagccaagaatgacttgcctatgcacgccctctgttggca 113
Query: 133 gttccgtccggcagccatggcgacggttgcacaaggtgagtttttgcggcgtggaggatg 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 gttccgtccggcagccatggcgacggttgcacaaggtgagtttttgcggcgtggaggatg 53
Query: 193 caatgcggctgcatcggcaggtcttcttggctagccagagggctctcgtcca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52 caatgcggctgcatcggcaggtcttcttggctagccagagggctctcgtcca 1
>RF00645;MIR169_2;EU941000.1/95-252 4577:Zea mays
Length = 158
Score = 313 bits (158), Expect = 8e-85
Identities = 158/158 (100%)
Strand = Plus / Plus
Query: 81 agccccttttggtagccaagaatgacttgcctatgcacgccctctgttggcagttccgtc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agccccttttggtagccaagaatgacttgcctatgcacgccctctgttggcagttccgtc 60
Query: 141 cggcagccatggcgacggttgcacaaggtgagtttttgcggcgtggaggatgcaatgcgg 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cggcagccatggcgacggttgcacaaggtgagtttttgcggcgtggaggatgcaatgcgg 120
Query: 201 ctgcatcggcaggtcttcttggctagccagagggctct 238
||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctgcatcggcaggtcttcttggctagccagagggctct 158
>RF00865;MIR169_5;ABXC01003263.1/1171-1002 4558:Sorghum bicolor
(sorghum)
Length = 170
Score = 143 bits (72), Expect = 2e-33
Identities = 154/177 (87%), Gaps = 12/177 (6%)
Strand = Plus / Minus
Query: 73 agatggagagcccc-ttttggtagccaagaatgacttgcctatgcacgccctctgttggc 131
|||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 170 agatggagagcccccttttgctagccaagaatgacttgcctatgcatgccctctgttggc 111
Query: 132 agttccgtccggcagccatggcgacggttgcacaaggtgagtttttgcggcgtgga---- 187
| |||| || ||||||||| || ||||||||||||| |||||||||| | ||
Sbjct: 110 aattcc-tc---cagccatggaga---ttgcacaaggtgaatttttgcggcatagatgat 58
Query: 188 ggatgcaatgcggctgcatcggcaggtcttcttggctagccagagggctctcgtcca 244
|||||||||| |||||||| ||||||||||||||||||||||||| |||||| ||||
Sbjct: 57 ggatgcaatgtggctgcatgggcaggtcttcttggctagccagagtgctctcatcca 1
>RF00865;MIR169_5;AAAA02031014.1/17953-17766 39946:Oryza sativa
Indica Group
Length = 188
Score = 61.9 bits (31), Expect = 5e-09
Identities = 50/55 (90%), Gaps = 1/55 (1%)
Strand = Plus / Minus
Query: 191 tgcaatgcggctgcatcggcaggtcttcttggctagccagag-ggctctcgtcca 244
||||||| |||||||| ||| ||||||||||||||||||||| ||||||| ||||
Sbjct: 55 tgcaatgtggctgcatgggccggtcttcttggctagccagagtggctctcatcca 1
Score = 58.0 bits (29), Expect = 8e-08
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 88 tttggtagccaagaatgacttgcctatgc 116
|||||||||||||||||||||||||||||
Sbjct: 170 tttggtagccaagaatgacttgcctatgc 142
>RF00865;MIR169_5;AC123517.2/63512-63700 39947:Oryza sativa Japonica
Group
Length = 189
Score = 60.0 bits (30), Expect = 2e-08
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 191 tgcaatgcggctgcatcggcaggtcttcttggctagccagag 232
||||||| |||||||| ||| |||||||||||||||||||||
Sbjct: 50 tgcaatgtggctgcatgggccggtcttcttggctagccagag 9
Score = 56.0 bits (28), Expect = 3e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 88 tttggtagccaagaatgacttgcctatg 115
||||||||||||||||||||||||||||
Sbjct: 176 tttggtagccaagaatgacttgcctatg 149
>RF00865;MIR169_5;AC123517.2/59786-59972 39947:Oryza sativa Japonica
Group
Length = 187
Score = 60.0 bits (30), Expect = 2e-08
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 191 tgcaatgcggctgcatcggcaggtcttcttggctagccagag 232
||||||| |||||||| ||| |||||||||||||||||||||
Sbjct: 52 tgcaatgaggctgcatgggccggtcttcttggctagccagag 11
Score = 52.0 bits (26), Expect = 5e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 88 tttggtagccaagaatgacttgccta 113
||||||||||||||||||||||||||
Sbjct: 174 tttggtagccaagaatgacttgccta 149
>RF00865;MIR169_5;ABIM01014270.1/4571-4728 3649:Carica papaya
(papaya)
Length = 158
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 88 tttggtagccaagaatgacttgcct 112
|||||||||||||||||||||||||
Sbjct: 144 tttggtagccaagaatgacttgcct 120
>RF00645;MIR169_2;ABIM01014270.1/4721-4577 3649:Carica papaya
(papaya)
Length = 145
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 88 tttggtagccaagaatgacttgcct 112
|||||||||||||||||||||||||
Sbjct: 8 tttggtagccaagaatgacttgcct 32
>RF00645;MIR169_2;AASG02003632.1/1429-1542 3988:Ricinus communis
(castor bean)
Length = 114
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 88 tttggtagccaagaatgacttgcc 111
||||||||||||||||||||||||
Sbjct: 8 tttggtagccaagaatgacttgcc 31
>RF00865;MIR169_5;AARH01006471.1/67165-67023 3694:Populus
trichocarpa
Length = 143
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 88 tttggtagccaagaatgacttgcctat 114
||||||||||||| |||||||||||||
Sbjct: 126 tttggtagccaaggatgacttgcctat 100
>RF00645;MIR169_2;AARH01006471.1/67030-67159 3694:Populus
trichocarpa
Length = 130
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 88 tttggtagccaagaatgacttgcctat 114
||||||||||||| |||||||||||||
Sbjct: 11 tttggtagccaaggatgacttgcctat 37
