miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;EU944277.1/110-337 4577:Zea mays
Length = 228
Score = 113 bits (57), Expect = 1e-24
Identities = 83/89 (93%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 11 caccacgagttggtgaagctgccagcatgatctggttctgatggtggt-atatgtataag 69
|||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||
Sbjct: 1 caccacgagttggtgaagctgccagcatgatctggttctgatggtggtggtatatgtaag 60
Query: 70 atgaatgtaatctatactaccggcccctg 98
||| ||||||||||||||| |||||||||
Sbjct: 61 atggatgtaatctatacta-cggcccctg 88
Score = 91.7 bits (46), Expect = 4e-18
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 190 atgagcaccaggaccaggtcatgctgtagtttcatctgctggtggc 235
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 atgagcaccaggaccaggtcatgctgtagtttcatctgctggtggc 228
>RF00640;MIR167_1;BT062276.1/99-327 4577:Zea mays
Length = 229
Score = 103 bits (52), Expect = 1e-21
Identities = 74/80 (92%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 11 caccacgagttggtgaagctgccagcatgatctggttctgatggtggt-atatgtataag 69
||||||||||||||||||||||||||||||||||||| |||||||||| ||| | ||||
Sbjct: 1 caccacgagttggtgaagctgccagcatgatctggttatgatggtggtggtatatgtaag 60
Query: 70 atgaatgtaatctatactac 89
||| ||||||||||||||||
Sbjct: 61 atggatgtaatctatactac 80
Score = 103 bits (52), Expect = 1e-21
Identities = 52/52 (100%)
Strand = Plus / Plus
Query: 184 taattaatgagcaccaggaccaggtcatgctgtagtttcatctgctggtggc 235
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 taattaatgagcaccaggaccaggtcatgctgtagtttcatctgctggtggc 229
>RF00640;MIR167_1;ABXC01005647.1/68869-69033 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 60.0 bits (30), Expect = 2e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 11 caccacgagttggtgaagctgccagcatgatctg 44
|||||| |||||||||||||||||||||||||||
Sbjct: 1 caccacaagttggtgaagctgccagcatgatctg 34
Score = 54.0 bits (27), Expect = 1e-06
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 204 caggtcatgctgtagtttcatctgctggtgg 234
|||||||||||||||||||||| ||||||||
Sbjct: 134 caggtcatgctgtagtttcatccgctggtgg 164
>RF00640;MIR167_1;CT828788.1/88-212 39946:Oryza sativa Indica
Group
Length = 125
Score = 60.0 bits (30), Expect = 2e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 11 caccacgagttggtgaagctgccagcatgatctg 44
|||||| |||||||||||||||||||||||||||
Sbjct: 1 caccacaagttggtgaagctgccagcatgatctg 34
Score = 58.0 bits (29), Expect = 6e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 204 caggtcatgctgtagtttcatctgctggt 232
|||||||||||||||||||||||||||||
Sbjct: 94 caggtcatgctgtagtttcatctgctggt 122
>RF00640;MIR167_1;AACV01003428.1/8526-8249 39947:Oryza sativa
Japonica Group
Length = 278
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 24 tgaagctgccagcatgatctggtt 47
||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggtt 37
>RF00640;MIR167_1;EU549029.1/122-486 3702:Arabidopsis thaliana
(thale cress)
Length = 365
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 24 tgaagctgccagcatgatctggt 46
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;EU549031.1/122-508 3702:Arabidopsis thaliana
(thale cress)
Length = 387
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 24 tgaagctgccagcatgatctggt 46
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;EU549010.1/122-488 3702:Arabidopsis thaliana
(thale cress)
Length = 367
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 24 tgaagctgccagcatgatctggt 46
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;AARH01012195.1/26948-26514 3694:Populus
trichocarpa
Length = 435
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 24 tgaagctgccagcatgatctggt 46
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;AC212802.1/77650-78085 3694:Populus trichocarpa
Length = 436
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 24 tgaagctgccagcatgatctggt 46
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;AASG02013372.1/3243-2901 3988:Ricinus communis
(castor bean)
Length = 343
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 24 tgaagctgccagcatgatctggt 46
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;BABK01002345.1/2496-2649 34305:Lotus japonicus
Length = 154
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 24 tgaagctgccagcatgatctggt 46
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;CAAP02000801.1/49293-49646 29760:Vitis vinifera
Length = 354
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 24 tgaagctgccagcatgatctggt 46
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;ABXC01006864.1/41201-41318 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 24 tgaagctgccagcatgatctggt 46
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;AAAA02020690.1/41483-41278 39946:Oryza sativa
Indica Group
Length = 206
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 24 tgaagctgccagcatgatctggt 46
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;AC210447.1/128234-128320 4538:Oryza glaberrima
(African rice)
Length = 87
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 ggtgaagctgccagcatgatctg 44
|||||||||||||||||||||||
Sbjct: 12 ggtgaagctgccagcatgatctg 34
>RF00640;MIR167_1;AARH01033933.1/298-187 3694:Populus trichocarpa
Length = 112
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 ggtgaagctgccagcatgatct 43
||||||||||||||||||||||
Sbjct: 12 ggtgaagctgccagcatgatct 33
>RF00640;MIR167_1;AARH01008931.1/3492-3395 3694:Populus
trichocarpa
Length = 98
Score = 44.1 bits (22), Expect = 0.001
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 11 caccacgagttggtgaagctgccagcatgatctg 44
|||||| ||| | |||||||||||||||||||||
Sbjct: 1 caccactagtagttgaagctgccagcatgatctg 34
>RF00640;MIR167_1;AASG02001065.1/6152-6064 3988:Ricinus communis
(castor bean)
Length = 89
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 24 tgaagctgccagcatgatctgg 45
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctgg 35
>RF00640;MIR167_1;AASG02000565.1/57130-57272 3988:Ricinus communis
(castor bean)
Length = 143
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 ggtgaagctgccagcatgatct 43
||||||||||||||||||||||
Sbjct: 12 ggtgaagctgccagcatgatct 33
>RF00640;MIR167_1;EU952646.1/178-293 4577:Zea mays
Length = 116
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 24 tgaagctgccagcatgatctgg 45
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctgg 35
>RF00640;MIR167_1;AL928781.4/79791-79930 4530:Oryza sativa (rice)
Length = 140
Score = 44.1 bits (22), Expect = 0.001
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 23 gtgaagctgccagcatgatctggttctgat 52
||||||||||||||||||||| | ||||||
Sbjct: 13 gtgaagctgccagcatgatctagctctgat 42
>RF00640;MIR167_1;AY551235.1/11-128 4530:Oryza sativa (rice)
Length = 118
Score = 44.1 bits (22), Expect = 0.001
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 11 caccacgagttggtgaagctgccagcatgatctg 44
|||||| ||| | |||||||||||||||||||||
Sbjct: 1 caccacaagtggatgaagctgccagcatgatctg 34
